Pectobacterium polaris: BJK05_12515
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Entry
BJK05_12515 CDS
T05195
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
ppoa
Pectobacterium polaris
Pathway
ppoa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppoa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BJK05_12515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppoa03400
]
BJK05_12515
DNA repair and recombination proteins [BR:
ppoa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BJK05_12515
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BJK05_12515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_29
AAA_16
nSTAND1
RsgA_GTPase
DnaJ_CXXCXGXG
AAA_23
nSTAND3
AAA_25
NACHT
cobW
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
ASY80765
UniProt:
A0AAW4NUH5
LinkDB
All DBs
Position
complement(2856006..2858840)
Genome browser
AA seq
944 aa
AA seq
DB search
MDKIEVRGARTHNLKNINLIIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRC
PEHDVPLDAQTVSQMVDNVLAQPEGKRLMLLAPIVKDRKGEHSKTLENLASQGYIRARID
GEVCDLSDPPKLELQKKHTIEVVVDRFKVREDLAQRLAESFETALDLSGGSVVVADMDDP
TQPELLFSANFACPVCGYSMHELEPRMFSFNNPAGACPSCDGLGVQQFFDPSRVVQNAEL
SLAGGAIRGWDRRNFYYFQMLRSLAEHYKFDVDAPFESLSAAVQKVILYGSGKENVEFKY
INDRGDTSVRRHPFEGVLHNMERRYKETESTAVREELAKFISNRSCASCGGTRLREEARN
VFVEQTTLPQISDMSIGHAMTFFQNMKLSGQRAQIAEKVLKEIGDRLKFLVNVGLNYLSL
SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLETLIHLRNLGNT
VIVVEHDEDAIRAADHVIDIGPGAGVHGGQIVAEGTMEEIMAVPDSLTGQFLSGKRKIEI
PKQRVPADPTKVLKLIGAKGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPLAQR
QLNGATLAEPAAHREIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGVPE
SRTRGYNPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDQCKGKRYNRETLEIQY
KGKGIHEVLDMTIEEAREFFDAIPALARKLQTLIDVGLSYIRLGQSATTLSGGEAQRVKL
SRELSKRGTGQTLYILDEPTTGLHFADIQQLLTVLHQLRDQGNTIVVIEHNLDVIKTADW
IVDLGPEGGSGGGEILVSGTPETVAECEQSHTARFLRPILAREA
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
atggataagatcgaagttcgtggtgctcgtacccataatctcaagaatatcaacctgata
attcctcgtgacaagctgattgtaatcaccggtttgtctggttcgggtaagtcatcgctg
gcgtttgacacgctgtatgccgaagggcagaggcgctatgtggaatcactctccgcctac
gcccgtcagttcctgtcgctgatggaaaaaccggacgtcgatcatatcgaagggctgtcg
cccgccatctctatcgaacagaaatccacttcgcataacccgcgttccacggtcgggacg
attaccgaaattcatgactacctgcgtttgctgtttgcgcgcgtgggtgagccgcgctgc
ccggagcacgatgtgccgctggatgcgcagacggtcagccagatggtggacaacgtgctg
gcgcagccggaaggcaaacgcctgatgctgctggcaccgattgttaaagatcgcaaaggc
gaacacagcaaaacgctggaaaacctggcttcacagggctatatccgcgcccgtatcgac
ggcgaagtgtgcgatctgtccgatccgccgaagctggaattacagaaaaagcacactatt
gaagtcgtcgttgaccggtttaaagtgcgcgaagatctggcgcagcggctagcagagtcg
tttgaaaccgcactagatctgtccggcggtagcgtagtggtggcggatatggacgatccg
acgcagccagaactgctgttctcggcgaactttgcctgtccggtgtgtggctacagcatg
cacgaactggaaccgcgtatgttctcgttcaacaacccagcgggcgcgtgcccaagctgt
gatggtctgggtgtgcagcagttcttcgatccgtcccgcgtggtgcaaaatgccgagctg
tcgctggcaggcggcgcgattcgcggctgggatcgccgcaacttctactattttcagatg
ctgcgctcactggcggagcactacaaatttgacgtcgatgccccatttgaaagcctgagc
gccgcggttcagaaagtgattctgtacggctccggtaaagagaacgtcgaattcaaatac
atcaacgatcgtggcgacacctcggtgcgtcgccatccgttcgaaggcgtgctgcacaac
atggagcgccgttataaagagacggagtccacggctgtgcgcgaagagctggcgaaattc
atcagcaaccgttcctgcgccagctgcggcgggacgcgcctgcgtgaagaagcgcgtaac
gtgtttgtcgagcagacgacgctgccgcagatttccgatatgagcatcggccatgcgatg
acgttcttccaaaatatgaagctcagcgggcagcgcgcccaaatcgccgagaaagtgctg
aaagagattggcgatcgactgaagtttctggtgaacgtcgggctgaactatttgtcgctc
tcccgttcggcggaaacgctgtccggcggcgaagcgcagcgtattcgtctggcgagccag
atcggtgccgggctggttggcgtcatgtacgtactggatgagccgtccatcggtctgcat
cagcgtgataacgagcgactgctggaaaccctgattcacctgcgtaatctgggcaatacc
gttattgtggtggaacatgatgaagatgcgattcgcgccgctgaccatgtgattgatatc
ggccccggtgcgggcgtgcatggcggccagattgtcgcagaaggcacaatggaagagatc
atggcggtgccggattcgctgacggggcagttccttagcggtaaacgcaagatcgaaatc
ccgaaacagcgcgtgcctgcggatccgaccaaagtgctgaagctgattggcgcgaagggc
aataacctgaaagacgttacgctgacgctgccggttgggctatttacctgcatcaccggc
gtgtcgggatcgggtaaatccacccttatcaacgataccttgttcccactggcgcagcgt
cagttgaacggtgcgacgctggcggaacccgccgctcatcgcgagattcaggggctggag
catttcgataaggtgatcgatatcgatcaaagcccgattggtcgtacgccgcgctccaac
ccggcaacctataccggtattttcacaccgattcgtgagctgtttgccggcgtgccggaa
tcccgtactcgtggctacaatcccggccgtttcagctttaacgtgcgcggtggacgctgc
gaagcctgtcagggcgacggcgtgattaaggtcgaaatgcacttcctaccggatgtctat
gtgccgtgtgaccagtgcaaaggcaaacgctataaccgcgaaacgctggaaattcaatat
aaaggcaaaggcatccatgaagtgctggatatgaccatcgaagaagcgagagagttcttt
gatgccattccggcgctggcgcgaaagctgcaaacgctgatcgacgtgggcctgtcctac
attcgccttgggcagtcggccaccacgctgtccggcggggaagcgcagcgtgtgaaactg
tctcgcgagctgtcaaaacgcggaaccgggcagacgctgtatattctcgacgagcctacg
accggcctgcactttgccgatattcagcagcttcttaccgttctgcatcagctgcgcgat
cagggcaataccatcgtggtgattgagcacaatctggatgtaattaaaacggcagactgg
attgttgacttagggccggaaggtggcagcggcggtggagaaatcctggtctccggtacg
ccagaaacggtagcagagtgcgaacagtctcacaccgcgcgcttcttgcgaccgattctg
gcacgcgaagcctga
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