Pectobacterium polaris: BJK05_14830
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Entry
BJK05_14830 CDS
T05195
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ppoa
Pectobacterium polaris
Pathway
ppoa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppoa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BJK05_14830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppoa03019
]
BJK05_14830
03400 DNA repair and recombination proteins [BR:
ppoa03400
]
BJK05_14830
Enzymes [BR:
ppoa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BJK05_14830
Messenger RNA biogenesis [BR:
ppoa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BJK05_14830
DNA repair and recombination proteins [BR:
ppoa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BJK05_14830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
ASY81194
LinkDB
All DBs
Position
complement(3376294..3378123)
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AA seq
609 aa
AA seq
DB search
MSTAEVLNKEALAVQVLRDTFGYQQFRPGQQEIISATLSGQDCLVIMPTGGGKSLCYQIP
ALVMDGLTLVVSPLISLMKDQVDQLQAYGVSAACLNSTQTREQQLEVMAGCRTGQIKLLY
IAPERLTTDSFLDHLAHWQIALIAVDEAHCISQWGHDFRPEYRALGQIKQRFPHLPFIAL
TATADEATRNDIVRLLDLQSPLIQISSFDRPNIRYTLVEKFKPLDQLWMFVQAQRGKSGI
IYCNSRSRVEDISARLQARGLSAGAYHAGLDNERRAQVQEAFLRDDLQVVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLAAEAALFYDPADMAWLRRCLEEKPAGPQ
LDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEACGNCDICLDPPKRYDGLVEAQKAL
SCVYRVGQRFGLGYIVEVLRGANNQRIRDFGHDKLPVYGIGKDKSQEHWVSVLRQLIHLG
LLNQNITMHSAVQLTESARPVLRGEMPLQLAVPRVINLKPRANQKSYGGNYDRKLFAKLR
KLRKSIADEDNIPPYVVFSDATLLEMAEMMPITAGELLNINGVGHRKLERFGAPFMNMIR
DHVDNNDDE
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
gtgtctacggcggaagtattgaataaggaagcgctggcggttcaggttctgcgggacacg
ttcggctaccagcaattccgaccgggtcagcaggaaattatcagcgcgacgctcagtggg
caggactgtctggttatcatgccgacaggcggcggtaaatcgctgtgctatcaaatccct
gcgctggtgatggacgggctgacgctagtggtgtccccgttgatttcactgatgaaagat
caggtcgatcagcttcaggcctacggtgtttcggcagcctgcctgaattcgacgcagacg
cgtgagcagcagcttgaggtgatggcgggttgtcgtactggccagatcaagctgctttat
attgcgcctgaacgcctgacgacggacagcttcctcgatcatcttgcccactggcagatc
gccctgatcgcggtggatgaagcgcactgtatttcccaatgggggcacgatttccgccct
gaataccgggcgctggggcagattaaacagcgtttccctcatcttccttttattgcgctg
accgctaccgctgacgaagctacgcggaacgacatcgttcgtctgttggatctccagtcg
ccgctgattcagatcagcagctttgaccgcccgaatattcgctacacgctggtggagaag
ttcaaaccgctcgaccagctctggatgttcgtgcaggcgcagcgtggaaaaagcggcatc
atctactgcaatagccgttcccgcgtggaggacattagcgcgcgtttgcaggcgcgtggg
ctgagcgcaggggcttatcacgctggattggataacgaacgacgtgcacaggtgcaggaa
gcgttcctgcgtgacgatcttcaggtggtggtcgcgaccgttgcatttggtatgggcatc
aacaagcctaacgtgcggttcgtggtgcattttgatattccgcgcaacatcgaatcctac
tatcaagaaacggggcgagctgggcgtgacggcctcgctgctgaagctgcgctgttctac
gatccggcggatatggcgtggctgcgccgctgtctggaagaaaagccggctgggccgcag
ttggatatcgaacgtcataaactcaatgcgatgggcgcgtttgccgaagcgcagacctgc
cgccgtctggtgttgctgaactatttcggtgaaggacgccaagaggcctgcggcaactgc
gatatttgtctcgatccgccgaagcgctatgacgggctggtagaagcgcaaaaggcgctc
tcctgcgtataccgagttgggcagcgctttggtttaggctatatcgtcgaggtgctgcgc
ggagcgaataatcagcgtatccgtgacttcggccatgacaaactgccggtttacggtatt
ggtaaagataaatcgcaggagcattgggtcagcgtgctgcgccagttgattcatctgggc
ttgctgaaccagaacatcacaatgcattccgccgtacagcttaccgaatctgcgcgccca
gtgttgcggggagagatgccgctacagctggccgtgccgcgtgtgattaacctgaaaccg
cgcgccaatcaaaaatcttacggtggaaattacgaccgcaagctgtttgccaaattgcgc
aaactgcgtaaatccatcgcggatgaagacaatattccgccttacgtggtgttcagcgat
gccacgctgctggagatggctgaaatgatgccgatcactgcgggtgagctgctgaatatc
aacggggttggacaccgtaaactcgaacgtttcggtgcgcctttcatgaacatgattcgc
gatcatgtcgataataatgatgacgagtga
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