Pectobacterium polaris: BJK05_15055
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Entry
BJK05_15055 CDS
T05195
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
ppoa
Pectobacterium polaris
Pathway
ppoa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppoa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BJK05_15055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppoa03019
]
BJK05_15055
Enzymes [BR:
ppoa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BJK05_15055
Messenger RNA biogenesis [BR:
ppoa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BJK05_15055
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
CCDC138_C
Motif
Other DBs
NCBI-ProteinID:
ASY81233
UniProt:
A0AAP9BIZ0
LinkDB
All DBs
Position
3423472..3424761
Genome browser
AA seq
429 aa
AA seq
DB search
MSKTHLTEQKFSDFALHPQVIEALESKGFHNCTPIQALALPLALSGRDVAGQAQTGTGKT
LAFLASTFHYLLSHPANAERQTNQPRALIMAPTRELAVQIHSDAEALSHATGLKLGLAYG
GDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIR
WLFRRMPAAAQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRITEELFYPSN
EEKMRLLQTLLEEEWPDRCIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILE
EFTQGNLDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGQSGFSISLA
CEEYALNLPAIETYIGHGIPVSKYNSDALMSDLPAPKRLTRPPRSNNGPRRHNAPRRSGA
PRNNRKRAE
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacacttaactgaacagaagttttccgacttcgccctgcacccgcaggtt
attgaagctcttgaaagtaaagggtttcataactgtacgcctattcaggcgttagctctg
ccattggctctgtcagggcgtgatgttgcgggtcaggcgcaaaccggtaccggcaagacg
ctggcttttcttgcgtctactttccattatctgctttcacaccctgcaaatgcagagcgt
cagaccaaccagccacgtgctttaattatggcaccaacccgtgaactggctgtccagatt
cactctgatgcagaagcgctgtctcatgcaactgggctaaaattaggtttagcctacggt
ggcgacggctacgataaacagcttaaagtgctggaaagcggcgttgatattctgatcggc
accaccggtcgcctgatcgactacgccaaacagaaccatattaatctcggtgcgattcag
gttgtcgtgctggacgaagccgatcgcatgtacgatcttggcttcatcaaagacattcgc
tggctattccgccgcatgcccgcagcggcacagcgcctgaacatgctcttttccgctacg
ctctcctaccgggtgcgtgaactcgcgtttgaacagatgaataacgccgagtatgtggaa
gtcgaaccggaacagaaaaccggccaccgtattacagaagaactgttttatccgtccaac
gaagaaaaaatgcgcctgctccaaacgctgctggaagaagagtggccggaccgctgcatt
attttcgcgaataccaagcatcgctgcgaagacgtctggggccatctggctgccgacggc
catcgcgttgggctgctgacgggcgacgtcgcgcagaaaaaacgtctgcgtattctggaa
gaatttacccagggtaatctggatattctggtagcaacggacgttgcagcacgcggtttg
catattccttctgtgacccacgttttcaactacgatctgccggatgactgcgaagactac
gttcaccgtattggtcgtacaggccgtgcgggacaaagcggattctctatcagtctggcc
tgtgaagagtacgcgctgaatctcccggctatcgaaacctatatcggtcacggtatccca
gtcagcaaatacaacagtgacgcgctgatgagcgatttacctgcgccgaagcgtttaaca
cgtccaccgcgttccaataatggcccgcgccgacacaatgcgccgcgccgcagcggagcg
cctcgtaataaccgtaaacgagcggaataa
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