Pectobacterium polaris: BJK05_17300
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Entry
BJK05_17300 CDS
T05195
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ppoa
Pectobacterium polaris
Pathway
ppoa03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ppoa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BJK05_17300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppoa03400
]
BJK05_17300
Enzymes [BR:
ppoa01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
BJK05_17300
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
BJK05_17300
DNA repair and recombination proteins [BR:
ppoa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
BJK05_17300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_6
zf-dskA_traR
Motif
Other DBs
NCBI-ProteinID:
ASY81648
UniProt:
A0AAW4P4R2
LinkDB
All DBs
Position
3941208..3942017
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AA seq
269 aa
AA seq
DB search
MPELPEVETSRRGISPYLIGHTILYAEVRNSRLRWPVSAEILSLSDEPVLSVRRRAKYLL
IELTRGWIIVHLGMSGSLRVLPEYSEPEKHDHVDLVMDSGKVLRYTDPRRFGAWLWTDNL
ETCSVLAHLGPEPLEAEFSADYLYQASRGKKTAIKQWIMDNKVVVGVGNIYASESLFAAG
IHPDRSAGSLNENDAAVLVGVIKQVLQLSIEQGGTTLRDFLQSDGKPGYFAQELRVYGRN
GELCRTCGTPIEIAKHGQRSTFFCRRCQK
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattacctgaggttgaaaccagccgtcgtgggatttcgccgtatcttatcggt
cacaccattctttatgctgaagtgagaaactcacgcctgcgctggccggtatcggctgag
attctttcgctgagcgatgagccggtgctaagtgtgcgtcggcgggcaaaatatctgctg
attgagctgacgcgtggctggattattgtgcatctcggcatgtctggcagcctgcgggta
ttgccggaatatagcgagccggagaagcacgatcatgttgatttggtgatggacagcggt
aaggtgctgcgttacaccgatccccgacgttttggtgcctggctgtggacggataatctg
gaaacttgttcggtattggcgcatctcgggccagaaccgttagaggcagaattctctgca
gattatctttatcaggcctcacgcggtaaaaagacggcaatcaaacagtggattatggat
aacaaagtcgtcgtcggcgtaggcaatatttacgcgagcgaatcgctgtttgcggcgggt
atccatcctgacagaagcgctggatcgttaaatgaaaacgatgccgccgtgttggtgggc
gtgattaaacaggtgctacagctttcgattgagcagggtggcacgacgctgcgtgacttt
ttgcaatcagatggcaaacccggttatttcgcgcaggagctacgcgtctatggccgcaac
ggtgaactttgtcggacatgcgggacgccgatagaaatcgcgaagcatgggcagcgcagc
acgtttttctgtcgccgctgccagaagtaa
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