Pectobacterium polaris: BJK05_19055
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Entry
BJK05_19055 CDS
T05195
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ppoa
Pectobacterium polaris
Brite
KEGG Orthology (KO) [BR:
ppoa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppoa03016
]
BJK05_19055
Enzymes [BR:
ppoa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BJK05_19055
Transfer RNA biogenesis [BR:
ppoa03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BJK05_19055
Prokaryotic type
tRNA splicing ligases
BJK05_19055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
ASY82660
LinkDB
All DBs
Position
4349958..4351184
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AA seq
408 aa
AA seq
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MKTQAYDMMSPVNSAPVKMWTQGVPVEPEARDQLLNTAKMPFIFKHLAVMPDVHLGKGST
IGSVIPTRGAIIPAAVGVDIGCGMIAVRTSLVASDLPDNLMGLRSAIEQAVPHGRSVTRS
KRDVGSWQNPPQTVDAHWSLLEPRFKRLTDKYPQLLKTNNYQHLGTLGTGNHFIEICLDE
VDRVWVMLHSGSRGVGNAIGSLFIKLAQEDMQRHIANLPDRNLAYFEEGSLHFDDYIEAV
EWAQDFARHNREVMMSHTLAALSRIVTKPFTTQQEGVNCHHNYVQRETHFGESVLITRKG
AVSAQKGQMGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRTMSRTAAKKRFTVEDQIRA
TAHVECRKDSDVIDEIPMAYKDIDKVMAAQSSLVEIVHTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacgcaggcttacgacatgatgtcaccagtgaatagcgcgccggtaaaaatgtgg
acgcagggtgtgcctgtggagccggaagctcgggaccaactgttgaatacggccaaaatg
ccgttcatttttaaacatctggcggtgatgccggatgtgcatctgggaaaagggtcgacg
attggtagcgtgatcccaacacgtggcgcgattatccccgctgcggtaggcgtggatatc
ggttgcgggatgatcgcggtgcgtacgtcactggttgccagcgacctgccggataacctg
atggggctgcgtagcgcgattgaacaagcggtgccgcacggacgtagcgtaacgcgttcc
aaacgtgatgtcggttcctggcagaatccgccgcagacggtggatgcgcactggtcactg
ctggaaccgcgttttaaacgtttgacggataaatatccgcagttgctgaaaaccaacaac
tatcagcatctgggaacgctaggaacgggtaaccactttatcgaaatctgtctggatgaa
gtggatcgcgtgtgggtgatgttgcatagcgggtcgcgtggtgtggggaacgcgattggc
tcgctgttcatcaagctggcacaggaagatatgcagcggcacattgcgaatctgccggac
cgtaatctggcgtatttcgaggaaggaagcctgcattttgacgattacatagaagcggtg
gaatgggcgcaggattttgcccgtcataaccgtgaagtgatgatgtcgcatacgctggcg
gcgctgtcccgtattgtgacgaagccgtttaccacccagcaggaaggcgtgaactgccac
cataactacgtgcagcgtgaaacgcactttggtgaatcggtgctgatcacccgtaaaggg
gcggtatcggcgcagaaaggccagatggggattattccggggtcgatgggcgcgaagagc
tttatcgtgcgtggattggggaacgaagagagcttctgttcctgtagccacggcgcgggg
agaaccatgagccgtaccgccgcgaaaaaacgcttcactgtggaagatcagattcgtgcg
actgcgcacgtcgaatgcagaaaagacagcgacgttatcgatgaaatcccgatggcgtac
aaagatatcgataaggtgatggcggcacagtcatcgctggtggaaattgtgcatacgctg
cgtcaggtggtgtgtgtgaaaggataa
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