Pectobacterium polaris: BJK05_19755
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Entry
BJK05_19755 CDS
T05195
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ppoa
Pectobacterium polaris
Pathway
ppoa02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ppoa00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BJK05_19755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppoa03021
]
BJK05_19755
Transcription machinery [BR:
ppoa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BJK05_19755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
HTH_SUN2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
ASY82092
UniProt:
A0AAP8X4P8
LinkDB
All DBs
Position
complement(4505413..4507251)
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AA seq
612 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIIDSDQIEDIIQMINDMGIQVMEEAP
DADDLLLAENTNDADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGESRLSDLITGFVDPNAEEDIAPTA
THVGSELSSEEMDDDDEEKEDEEEEEDDNSIDPELAREKFTELRVQYETTRQVIKAHGRS
HALAAQEILNLSEVFKQFRLVPKQFDFLVNSMRSMMDRVRTQERLIIKLCVEQCKMPKKN
FVTMFTGNETNNTWFAAAVAMGKPWSEKLNDVEEDVTRSLQKLQQIEEETGLTIEQVKDI
NRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY
RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPE
ELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLR
SATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP
SRSEVLRSFLDD
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaagctgcttgtcacccgtggtaaggagcaaggc
tacctgacctatgctgaggtcaatgaccatctgccggaagatatcatcgactcggatcag
atcgaagatatcatccagatgattaacgacatgggcatccaggtgatggaagaagcaccg
gatgcagacgatctgttgctggccgaaaacaccaatgatgccgatgaagatgcagcagag
gctgctgcgcaggttctatccagtgttgaatcggaaattggtcgcaccaccgatccggtt
cgtatgtacatgcgtgaaatgggtaccgttgagctgttgacgcgtgagggcgagatcgat
atcgccaagcgtatcgaagacggtatcaaccaggttcagtgctctgttgcagagtatcct
gaagccattacttacctgctggaacagtatgaccgcgtcgaagcgggcgaaagccgcctg
tccgacctgatcactggcttcgtcgatcctaatgcggaagaggacattgcgcctaccgcg
actcacgttggttccgagctttcgagcgaagaaatggacgatgacgatgaggaaaaagaa
gacgaagaggaagaagaagacgacaacagcatcgatcctgagctggcgcgtgagaagttc
accgagctgcgtgtgcaatatgaaacgacccgtcaggttatcaaagctcacggtcgtagc
catgcattagcagcacaggaaatcctgaatctgtccgaagtcttcaaacagttccgtctg
gtgccgaaacagtttgatttcctggttaacagcatgcgttccatgatggatcgcgtccgt
actcaggaacgtttgatcattaagttgtgtgttgaacagtgcaaaatgccgaagaaaaac
ttcgtcacgatgttcactggtaatgaaaccaacaacacctggtttgccgcagcagtcgca
atgggcaagccatggtctgaaaagctgaatgatgttgaagaagacgtcacccgcagcctg
caaaaactgcagcagatcgaagaagaaactggcctgacgatcgagcaagttaaagacatc
aaccgtcgtatgtcgattggtgaagcgaaagcacgtcgcgccaagaaagaaatggtggaa
gctaacctgcgtctggttatttctatcgcgaagaaatacaccaaccgtggtttgcagttc
ctcgacctgattcaggaaggcaacatcggtctgatgaaagcggtagataagtttgaatat
cgccgtggttacaaattctcgacctatgcaacctggtggatccgtcaggcgatcacccgt
tctatcgccgatcaggcgcgtaccatccgtattccggtacacatgattgagacgatcaac
aaactgaaccgtatctctcgtcagatgttgcaggaaatgggtcgcgagccgacaccggaa
gagctggctgagcgtatgctgatgccggaagacaagatccgtaaagtgctgaaaatcgcg
aaagagccgatttcaatggaaaccccgattggtgatgatgaagattcacatttgggcgat
ttcatcgaagatacgacgctggagctgccgctggattccgccacatcggaaagcctgcgt
tctgcgacacacgacgtactggctggcttgaccgcacgtgaagcgaaagtcctgcgcatg
cgtttcggtatcgatatgaacaccgaccatacgctggaagaagtgggcaaacagtttgac
gttacgcgtgaacgtattcgtcagatcgaagcgaaagcgctgcgtaaactgcgccaccca
agccgttccgaagtgctgcgtagcttcctggatgattaa
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