Pectobacterium polaris: BJK05_20500
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Entry
BJK05_20500 CDS
T05195
Name
(GenBank) RNA polymerase subunit sigma
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
ppoa
Pectobacterium polaris
Pathway
ppoa02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
ppoa00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
BJK05_20500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppoa03021
]
BJK05_20500
Transcription machinery [BR:
ppoa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BJK05_20500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
PhyR_sigma-like
Sigma70_ECF
HTH_23
GerE
HTH_28
HTH_11
Motif
Other DBs
NCBI-ProteinID:
ASY82229
LinkDB
All DBs
Position
4673299..4673823
Genome browser
AA seq
174 aa
AA seq
DB search
MKSPAAACLHQPETLNVQQIYHDHHAWLQAWLRRRLGCSQQAADLAQDTFLRLICQHQAD
RIREPRAWLTTVAHGLVVNHWRRKDIENAYLQVLAEQEFTFSPSLEQQAMVVDALMAIDQ
MLATLPGKVRQAFLLVHLDGLTYRQVAEQLAVSERMVKKYMAQAMLNCLLCQDL
NT seq
525 nt
NT seq
+upstream
nt +downstream
nt
gtgaagagtcccgccgctgcctgcctccatcagcctgaaaccttaaacgttcagcagatt
tatcatgaccatcatgcctggttacaggcgtggctgcgtcggcgtttggggtgttcacag
caggctgcggatctggcgcaagatacgtttctgcgtttgatctgccagcatcaggccgat
cgcatccgtgaaccgcgtgcctggctgacgacagttgcccacgggctggtggtcaatcac
tggcgacgaaaagacatcgagaatgcctatcttcaagtgctggcagaacaagagtttact
ttttctccctcgctggaacagcaggcgatggtggttgatgcgctgatggccatcgaccaa
atgctggcgacgctgccgggcaaagtgcgtcaggcattcttgcttgtgcatctcgatggc
ctgacctatcggcaggttgctgaacaattagccgtttccgagcggatggtgaaaaaatat
atggcacaggcaatgctgaattgtctattgtgtcaggacttatga
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