Pectobacterium polaris: BJK05_21615
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Entry
BJK05_21615 CDS
T05195
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
ppoa
Pectobacterium polaris
Pathway
ppoa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppoa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
BJK05_21615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppoa03400
]
BJK05_21615
Enzymes [BR:
ppoa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
BJK05_21615
DNA repair and recombination proteins [BR:
ppoa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
BJK05_21615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
UvrD_C_2
Viral_helicase1
Helicase_RecD
AAA_11
SH3_13
AAA_22
UvrD-helicase
SLFN-g3_helicase
AAA_16
nSTAND3
Herpes_Helicase
PhoH
DEAD
MukB
AAA_28
UvrD_C
T2SSE
CbiA
FtsK_SpoIIIE
ResIII
AAA
DUF87
AAA_17
SRP54
Flavi_DEAD
Bcl-2
TrwB_AAD_bind
AAA_14
ATPase
NTPase_1
AAA_24
Motif
Other DBs
NCBI-ProteinID:
ASY82429
LinkDB
All DBs
Position
4948433..4950298
Genome browser
AA seq
621 aa
AA seq
DB search
MIALLETALTRRLLRPLDVQFARMLADETKPDLLLAAACLSAHSGAGHVCLPLENLQAQT
LFDGREPELAQQLLTEAGLNTVAAWQQRLLASDAVSDGSQPTPLVLQGEKLYLQRSWQSE
GRVARFIASERDTIPVDESAIRAVLDRLFPDAGEEVNWQKVAAAVALTRRIAVISGGPGT
GKTTTVAKLLAALIELNTGETLRIQLAAPTGKAAARLTESLGQALHRLAVDPLLRDAFPQ
EATTLHRLLGAVTDSQRLRHHQDNPLHLDVLIVDEASMVDLPMMANVIAALPPHARIIFL
GDRDQLASVEAGAVLGDICRFAEAGYSRARAQQLQRLTGCQLDESGPEGQTTVSDSICLL
RRSYRFDPHSGIGQLALAVNGGDDARVRAVLNGEFADITCSPLTEAEEYQAMLAQCVEGY
RDYLQLVATGSTPDAVLLAFQRYRQLCALREGPFGVAGLNQRIEQALHQAGLIQRSRNPL
NRWYPGRPVMIERNDAALGLFNGDIGIAMLGESGELRVFFPLPNGETKDVTPSRLPPHET
AYAMTVHKSQGSEFDHTALVLPNHYLPVLTRELVYTAITRARQRLSLYTDVRILCRAVKT
PTQRYSGLEERISALMKGDTP
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgattgcgttacttgaaacggcactgacgcggcggttgctacgcccgctggatgttcag
ttcgccagaatgctggcagatgagacaaagcccgatttgctgttggccgctgcctgcctg
agcgctcattcgggggcggggcatgtgtgtttaccgctggagaacttgcaggcgcagacg
ctgtttgatggccgcgagcctgaactggcgcaacagctgctcacggaagcagggctcaat
acggttgccgcatggcagcagcgcttactggcgtctgatgccgtcagcgatggcagccag
ccgacgccgctagtgctgcaaggagaaaagctgtatttacagcgtagctggcagagtgaa
ggccgcgtggcgcggtttattgccagcgagcgcgatacgatccctgtcgatgaatctgcg
atccgagcggttctggatcggctgtttcctgacgctggcgaagaggttaactggcagaag
gtggccgcggctgtcgccttgacgcgccgtattgcggttatttccggcgggccggggacg
gggaaaaccacgacggtggccaaattgctggcggcgctaattgagctgaatacgggagaa
acgttacgtattcaactggctgcaccgaccgggaaagcggctgcacggctcacggagtcg
ctggggcaggcgctgcaccgtcttgcggtagaccctctgctgcgggatgcgtttccgcag
gaagcgacaacgctgcatcggcttttgggtgcggtgacagatagccaacgtctgcgtcac
catcaggacaacccgctgcatttggatgtgctgattgtggatgaggcgtctatggtcgat
ctgccgatgatggcaaatgtgatcgccgcgcttccgccacatgccagaattatctttctg
ggcgatcgcgatcagttggcgtccgtcgaggcgggggcggtgttgggcgatatctgtcgg
tttgcggaggctggctatagccgtgcgcgggcgcagcagttgcagcggctgacgggctgt
caactggatgaaagcggccctgaagggcagacgacggtcagtgacagtatttgtctgtta
cgccggagctaccgtttcgatccgcattccgggattgggcaactggcgctggcggttaac
ggcggtgatgatgcgcgtgtgcgtgcggtgctgaacggcgagtttgccgatatcacctgt
agcccgttaaccgaggctgaagagtatcaggccatgctggcacagtgcgtcgaagggtat
cgtgattatctacagcttgttgcgacgggatccacgccggatgctgtgctgcttgccttc
cagcgctatcgccagctgtgcgcattgcgcgaagggccatttggcgtagcagggctgaat
cagcgcattgagcaggctttgcatcaggctggactgattcagcgcagccgtaatccgctt
aaccgctggtatcccggccgaccggtcatgattgaacgtaacgatgccgcattgggtctg
ttcaatggggatatcggtatcgccatgctgggagaaagcggggaactgcgcgtatttttc
ccgttgccgaatggcgaaaccaaagacgttacgccaagccgtctgccgccgcatgaaacg
gcctatgcgatgacggtgcataaatcacagggatcggagttcgatcataccgcgctggtg
ctgccgaaccactatttacccgtgctgacgcgggagctggtatataccgccatcacgcgt
gcgcgccagcgtttgtcactctataccgatgtccgtattctctgccgagcggtgaaaacg
ccaacgcagcgctatagcggcctggaagagagaattagcgcactgatgaaaggtgacaca
ccttaa
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