Peterkaempfera podocarpi: AB0761_12350
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Entry
AB0761_12350 CDS
T11007
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ppod Peterkaempfera podocarpi
Brite
KEGG Orthology (KO) [BR:
ppod00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppod03016
]
AB0761_12350
Enzymes [BR:
ppod01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
AB0761_12350
Transfer RNA biogenesis [BR:
ppod03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
AB0761_12350
Prokaryotic type
tRNA splicing ligases
AB0761_12350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
XHM95901
LinkDB
All DBs
Position
complement(2821392..2822585)
Genome browser
AA seq
397 aa
AA seq
DB search
MSYTEVPGVRVPIRMWTDPAAVEGAAMQQLRNISSLPWISGLAVMPDVHLGKGATVGSVI
AMEGAVCPAAVGVDIGCGMSAVKTSLTARDLPDDLARLRSSIERAIPVGRQGHDDPVDPR
RLHGLPTAGWEGFWERFDALAPSVRFRRERALSQMGSLGGGNHFIEVCLDTTGAVWLMLH
SGSRNIGKELAEHHIGVARSLPHNQDLADRDLAVFIADTPQMAAYREDLFWAQEYAKRNR
AIMMALFQDVVRREFRRAKVTFDQVISCHHNYVSEEVYDGRELLVTRKGAIRAGSGDYGI
IPGSMGTGSYIVRGLGNAAAFNSASHGAGRKMSRTAAKKRFTTRDLELQTRGVECRKDSG
VVDEIPGAYKPIEKVIEQQRDLVEVVAQLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacaccgaggtgcccggagttcgggtgcccatccggatgtggaccgatccggcg
gccgtcgagggcgcggccatgcagcagctgcgcaacatctcctcgctgccctggatcagc
ggactcgccgtgatgcccgatgtccacctgggcaagggcgccacggtcggctccgtgatc
gccatggagggcgcggtctgcccggccgcggtcggcgtggacatcggctgcgggatgagc
gcggtgaagacctcgctcaccgcccgcgacctgcccgacgacctcgcccggctgcgctcc
tcgatcgagcgggccatcccggtcggccgccagggccatgacgaccccgtcgacccgcgc
cggctgcacggtctgccgaccgccggctgggagggcttctgggagcgtttcgacgcactg
gccccgtcggtgaggttccgccgggagcgggcgctgtcgcagatgggatcgctcggcggt
ggcaaccacttcatcgaggtgtgcctggacaccaccggcgcggtctggctgatgctgcac
tccgggtcgcgaaacatcggcaaggagctggccgagcaccacatcggcgtggcccgctcg
cttccgcacaaccaggacctggccgaccgcgacctggcggtcttcatcgcggacaccccg
cagatggccgcctaccgtgaggacctcttctgggcgcaggagtacgccaagaggaacagg
gcgatcatgatggcgctcttccaggacgtggtccggcgggagttccgcagggccaaggtc
accttcgaccaggtgatctcctgtcaccacaactacgtcagcgaagaggtctacgacggg
cgggagttgctggtcacccggaagggggcgatccgggccggctccggcgactacgggatc
atccccggttcgatgggcacgggttcgtacatcgtccgcggcctcggcaacgccgcggcc
ttcaactcggcctcgcacggcgcgggtcggaagatgagccgcaccgccgccaagaagcgc
ttcaccacccgtgatctggagctgcagaccaggggagtggagtgccgcaaggacagcggt
gtggtggacgagatccccggcgcctacaagccgatcgagaaggtcatcgagcagcagcgg
gacctggtcgaggtggtcgcccagctgaagcaggtcgtctgtgtgaagggctga
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