Peterkaempfera podocarpi: AB0761_14365
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Entry
AB0761_14365 CDS
T11007
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ppod Peterkaempfera podocarpi
Pathway
ppod03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppod00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB0761_14365 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppod03021
]
AB0761_14365 (rho)
03019 Messenger RNA biogenesis [BR:
ppod03019
]
AB0761_14365 (rho)
Transcription machinery [BR:
ppod03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AB0761_14365 (rho)
Messenger RNA biogenesis [BR:
ppod03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AB0761_14365 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA
AAA_25
NACHT
SAP
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
XHM91552
LinkDB
All DBs
Position
complement(3308239..3310356)
Genome browser
AA seq
705 aa
AA seq
DB search
MSDTTDLMGARPDADAPDAAAAAPAPKRRRTAGSGLNGLVLAELQQLASGLGISGTGRMR
KSQLIDAIKEKHGGDPLLAGAEATAAPAAKRTAARSKAAEAKPAAAAAAEEKPARRTRAR
AAAAEPAQQIEIPGQVAGDAAAAAAEAPAPARTERPRRRATSAAGAPVGAAAEAVQETVA
ERAEPSAAVATETREKPVEDGRQTGEGRRDRRDRRERGERTERTERTERQEAGDGADGQG
GDRETRRDRRNRRDRDRQGGERPETRQDGGQPSTQTRERDQRRDQQPQDEDDFDGGRRGR
RGRYRDRNRRGGRREGFEGASEPQIGEDDVLIPVAGILDILDNYAFVRTSGYLPGPNDVY
VSLAQVRKNGLRKGDAITGAVRQPRDGERREKFNALVRLDSVNGMDPEAGRSRPEFGKLT
PLYPQERLRLETDPSVLTTRIIDLVAPIGKGQRGLIVAPPKTGKTMIMQAIANAITRNNP
ECHLMVVLVDERPEEVTDMQRSVKGEVISSTFDRPAEDHTVVAELAIERAKRLVELGHDV
VILLDSITRLGRAYNLAAPASGRILSGGVDSTALYPPKKFFGAARNIENGGSLTILATAL
VETGSRADEVVFEEFKGTGNMELKLDRKLSDKRIFPAVDVDASSTRKEEILLGSEELAIV
WKLRRVLHALDQQQAIELLLDRMKKTSSNGEFLMQIAKTTPGAID
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacaccaccgatctgatgggcgcgcgcccggacgccgacgctccggacgcagcg
gctgccgcccctgcgcccaagcgccgccggactgcgggctccggcctcaacggcctcgtc
ctcgccgagctccagcagctcgcctccggcctcggcatcagcggcaccggccgcatgcgc
aagagccagctgatcgacgccatcaaggagaagcacggcggcgacccgctgctcgccggc
gccgaggccaccgcggcccccgccgccaagcgcaccgcggccaggtccaaggccgccgag
gccaagcctgccgcggccgccgcggccgaggagaagcccgcccgccgcacccgggcccgg
gctgcggccgccgagcctgcgcagcagatcgagatccccggccaggtggcgggcgacgcc
gccgcggccgccgccgaggcccccgccccggcgcgtaccgagcggccccgccgccgggcg
acctcggccgccggcgcccccgtgggtgcagcagcggaggccgtgcaggagaccgtcgcc
gagcgcgccgagccgtccgcggctgtggccaccgagacccgtgagaagcccgtcgaggac
ggccgccagaccggcgagggccgccgcgaccgccgtgaccggcgcgagcgcggggagcgc
accgagcggacggagcggaccgagcgccaggaggccggcgacggtgccgacggccagggc
ggcgaccgcgagacccgccgcgaccggcgcaaccgccgcgaccgcgaccgccagggcggc
gagcgcccggagacccgtcaggacggcgggcagccgagcacccagacccgcgagcgcgac
cagcggcgcgaccagcagccgcaggacgaggacgacttcgacggtggccgccgcggccgc
cgtggccgctaccgcgaccgcaaccgccgtggcggccgtcgcgagggcttcgagggcgcg
agcgagccgcagatcggcgaggacgacgtcctgatcccggtcgccggcatcctggacatc
ctggacaactacgcgttcgtccggacctccggctacctgcccggccccaacgacgtgtac
gtctcgctggcccaggtccgtaagaacggcctgcgcaagggcgacgccatcaccggcgcc
gtgcgccagccgcgtgacggcgagcgccgtgagaagttcaacgcgctggtgcgtctggac
tcggtgaacggcatggacccggaggccggccgcagccgtcccgagttcggcaagctcacc
ccgctgtacccgcaggagcggctccgcctggagaccgaccccagcgtgctgaccacccgg
atcatcgacctggtcgcccccatcggcaagggccagcgcggtctgatcgtcgccccgccg
aagaccggcaagacgatgatcatgcaggcgatcgccaatgcgatcacccgcaacaacccc
gagtgccacctgatggtcgtcctggtcgacgagcgtccggaagaggtcaccgacatgcag
cggtcggtgaagggcgaggtcatctcctcgaccttcgaccgcccggcggaggaccacacg
gtcgtcgccgagctggccatcgagcgcgccaagcgcctggtggagctgggccacgacgtg
gtgatcctgctggactcgatcacccgtctcggccgtgcctacaacctggcggcgccggcc
tccggccgcatcctgtccggtggtgtcgactcgaccgcgctctacccgccgaagaagttc
ttcggtgccgcgcgcaacatcgagaacggcggctcgctgaccatcctcgccaccgcgctg
gtggagaccggctcccgggccgacgaggtcgtcttcgaggagttcaagggcaccggcaac
atggagctcaagctcgaccgcaagctctccgacaagcggatcttccccgcggtggacgtg
gacgcgtcctccacccgcaaggaggagatcctgctgggcagcgaggagctggccatcgtc
tggaagctgcgccgggtgctgcacgcgctcgaccagcagcaggccatcgagctgctgctg
gaccggatgaagaagaccagcagcaacggcgagttcttgatgcagatcgccaagaccacg
ccgggcgccatcgactga
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