Peterkaempfera podocarpi: AB0761_15085
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Entry
AB0761_15085 CDS
T11007
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ppod Peterkaempfera podocarpi
Pathway
ppod03420
Nucleotide excision repair
ppod03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppod00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AB0761_15085
03430 Mismatch repair
AB0761_15085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppod03400
]
AB0761_15085
Enzymes [BR:
ppod01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AB0761_15085
DNA repair and recombination proteins [BR:
ppod03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AB0761_15085
MMR (mismatch excision repair)
Other MMR factors
AB0761_15085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
XHM91674
LinkDB
All DBs
Position
complement(3458726..3461956)
Genome browser
AA seq
1076 aa
AA seq
DB search
MSAAITSPEQLKELLGIPFTAQQLAAITAPMAPAVVVAGAGSGKTTVMAARVVWLVGRGL
VRPEQVLGLTFTNKAAGELAERVRTALARAGVSGAEPGEDGDVLGEPEISTYHAFAGRLL
TEHGLRIGIEPDVRLLADATRFQLAARVLQSARGPYTALTGTVSTVVAELLALDGELAEH
LVDPERLRAYDSALLDELATVKLTNEELRRVPEAARGRGELLGLVEEYRRRKSSAGLMDF
GDQIAAAATLAQTRPEVGRLLRDQFRVVLLDEYQDTSVAQRLLLAGLFGRGPEYGGGHPV
TAVGDPCQAIYGWRGASVANLDEFPEHFPRPDGGPAARYSLSENRRSGGRLLDFANRLAA
PLREMHEGVEALRPAPGAEQDGFARCALLPSHAEEVDWLADSIAHLVRTGTAPGRIAVLC
RGGAAFPDIHAALVAREIPVEVVGLSGLLHLPEVADLVATCEVLQDPTANAALVRLLIGP
RWRIGPRDLALLGRRARDLVRVERGEGADRLAEAVAEADPTEVVSLADALETFLHPGTVA
DQDELPFSAEARVRFARLAREIRELRRSLADPLMDVMHRVLAATGLDVELAASPHALAAR
RRETLHAFLDVAASFADLDGDPSVGAFLAFLRAAQEYDRGLDNTLPGGEDTVKVLTAHKS
KGLEWDVVAVPGLVRDVFPSSRPRERWTSRRHVLPYALRGDADTLPAAPPWNAKGLKDFT
TNLRGQTATEELRLGYVAFTRPRSLLLASGHWWGASRKRPLGPSDFLEQLREHCERPGGA
GEVEVWADPPEEGAENPALAMAAELPWPLPLDPAARQARRVAAGVVRSRLDGLLPQQPSG
VRTPEDRRVVESWDRDLGVLLGELERSRRAVAEVPLPASLSASQLMRLAADPDGFARELA
RPMPRPPQPAARRGTRFHAWVEARFEPLMLIEADGLPGAEDDGIEDERDLARLKEAFLRT
PYAERTPYRVEAPFQLVLGGRVVRGRIDAVYRAEGGDAKSPQGPRFEVVDWKTNRRETAD
PLQLAIYRLAWAEQQGVPLEQVTAAFLYVRSGRVECPSDLPDRTALERILTGNSDE
NT seq
3231 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgccgccatcaccagccccgagcagctcaaggagctgctgggcatccccttcacc
gcccagcagctggcggcgatcaccgcgcccatggcaccggccgtggtggtcgccggggca
gggtcgggcaagaccacggtgatggcggcgcgggtggtctggctggtggggcggggcctg
gtccggcccgagcaggtgctgggcctcaccttcaccaacaaggccgccggcgagctggcg
gagcgggtgcgcaccgcgctggccagggccggggtgtccggtgctgagccgggcgaggac
ggggacgtcctgggcgagccggagatctccacgtaccacgccttcgccgggcggctgctc
accgagcacggtctgcggatcggcatagagcccgatgtccggctgcttgccgacgccacc
cgttttcagctggccgcgcgggtgctgcagtccgcccggggcccgtacacggcgctcacc
ggcaccgtctccaccgtggtcgccgagctgctggcgctcgacggggagctggcggagcac
ctggtggaccccgagcggctgcgggcgtacgactccgcgctgctggacgagctggccacg
gtgaagctgaccaatgaggaactgcggcgggtgcccgaggccgcccggggccgaggcgag
ctgctggggctggtcgaggagtaccggcgccgcaagagcagcgcggggctgatggacttc
ggtgaccagatcgccgccgccgcgacgctcgcgcagacccggcccgaggtggggcggctg
ctgcgggaccagttccgggtggtgctgctggacgagtaccaggacacctcggtggcccag
cggctgctgctggcgggcctcttcggccgcggccccgagtacggcggcggccaccccgtc
accgcggtgggggacccctgccaggccatctacggctggcgcggcgcttcggtggccaac
ctggacgagttcccggagcacttcccccggccggacggcggccctgcggcgcgctactcg
ctgagtgagaaccgccgcagtggtggccggctgctggacttcgccaaccggctcgccgcg
ccgctgcgggagatgcacgagggtgtggaggccctgcgccccgcccccggggcggagcag
gacggcttcgcccgctgtgcgctgctgcccagccacgcggaggaggtggactggctggcc
gactccatcgcccatctggtgcgcaccggcaccgcgccgggccggatcgcggtgctctgc
cgcggcggggcggcgttcccggacatccatgcggcgctggtggctcgtgagataccggtg
gaagtggtgggcctgtcggggctgctgcatctgcccgaggtcgccgacctggtggcgacc
tgcgaggtgctgcaggatcccacggccaacgccgccctggtcaggctgctgatcggcccg
cgctggcggatcggcccccgcgatctggcgctgctgggccgccgtgcgcgcgatctggtg
cgggtggagcgcggcgagggagccgaccggctggcggaggcggtcgccgaggccgacccc
accgaggtggtctcgctggccgacgccctggagacctttctgcatcccggcaccgtggcg
gaccaggacgagctgccgttctccgcggaggcccgggtgcggttcgcccggctggccagg
gagatccgggagctccgccgctcgctggcggacccgctgatggatgtcatgcaccgggtg
ctcgccgccaccggtctggatgtggagctggccgcctccccgcatgcgctggccgcccgc
cgccgggagaccctgcatgccttcctggatgtcgcggcctccttcgccgatctggacggc
gatccgtcggtcggcgcgttcctggcctttctgcgggcggcgcaggagtacgaccggggc
ctggacaacaccctgcccggcggcgaggacacggtgaaggtgctcaccgcccacaagtcc
aaggggctggagtgggatgtggtggcggtgcccggcctggtcagggacgtctttccgagc
agccgcccacgtgagcgctggaccagccgcaggcatgtgctgccgtacgccctgcggggt
gacgcggacaccctgccggcggcgccgccgtggaacgccaagggcctgaaggacttcacc
acgaacctgcgcgggcagacggccacggaggagctccgtctcggctatgtggcgttcacc
cggccccggagtctgctgctggcctccggccactggtggggtgcctcccgcaagcgtccg
ctcggtccctcggacttcctggagcagctgcgtgagcactgcgagcggccgggcggggcg
ggcgaggtggaggtgtgggccgacccgccggaggagggtgcggagaaccccgccctcgcc
atggccgccgagctgccctggccgctgccgctggacccggcggcccggcaggcccgccgg
gtggcggccggtgtggtccggtcccggttggacggacttctgccgcagcagccctcgggc
gtgcgcaccccggaggaccgccgggtggtggagtcctgggaccgggatctcggtgtgctg
ctcggcgagctggagcggtcccggcgggctgtggctgaggttccgctgccggcgtcgctc
tccgcctcgcagctgatgcggctggctgccgacccggacggtttcgcccgggagctggcc
cggccgatgccgaggccaccgcagcccgcggcccggcggggcacccgcttccacgcctgg
gtggaggcgcgcttcgaaccgctgatgctgatcgaggcggacggcctgcccggggcggag
gacgacgggatcgaggacgagcgtgatctggcccggctgaaggaggcctttctgcgcact
ccgtacgccgagcgcacgccctaccgggtggaggcacctttccagttggtgctgggggga
cgggtggtgcgcggccggatcgatgcggtgtaccgggccgagggcggcgacgcaaagtca
ccgcagggcccgcgcttcgaggtggtggactggaagaccaaccggcgggagaccgcggat
ccgttgcagctggccatctaccggctggcctgggcggagcagcagggggtgccgctggag
caggtcacggcagcgtttctgtatgtccgcagcggacgcgtcgaatgtccgtcagatctt
cccgaccgaacagcattggaacgcatcctgaccgggaacagtgatgaatag
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