Peterkaempfera podocarpi: AB0761_22020
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Entry
AB0761_22020 CDS
T11007
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ppod Peterkaempfera podocarpi
Pathway
ppod03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppod00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AB0761_22020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppod03021
]
AB0761_22020
03400 DNA repair and recombination proteins [BR:
ppod03400
]
AB0761_22020
Enzymes [BR:
ppod01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AB0761_22020
Transcription machinery [BR:
ppod03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AB0761_22020
DNA repair and recombination proteins [BR:
ppod03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AB0761_22020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TarH
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
XHM92865
LinkDB
All DBs
Position
4992107..4996003
Genome browser
AA seq
1298 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITWVDDERRTRDLPSLEAHVSVERQQIEQRRDADLESRAKKLEAD
LGELEAEGAKADVRRKVREGAEREMKQLRDRAQRELDRLDEVWSRFKNLKVQDLEGDELL
YRELRDRFGTYFSGAMGAAALQKRLESFDLEEEAERLREIIKTGKGQKKTRALKRLKVVS
AFLQTRNKPNGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR
PVVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTSDREDVKGGGR
SFTSTAEAMMAFDARELDLQAQIDVRLPAGTMPPRGWTAPVDEETGAPTWIEGEPFRLST
TLGRALFNELLPEDYPFVDYEVGKKQLSAIVNDLAERYPKVTVAATLDNLKAAGFHWATR
SGVTVSISDVVVPPSKPQILEGYEAQAEKIQKQYERGLITNDERKQELVAIWTKATNEVA
EAMNANFPKTNPIFMMVDSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASFREGLTV
LEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGLKLEIASVGT
DGVLRKADDVETSVYARCLAEDITVDGQVLAQAGTDLGDVLIDELVRHGVSTVKTRSILT
CESAVGTCAMCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQ
GLPRVVELFEARTPKGVAPISEAAGRVRVEDTEKTRKLVVTPDDGSEEIAYPVSKRVKLM
VSEGEHVEVGQKLTMGATNPHDVLRILGQRAVQVHLVQEVQKVYNSQGVSIHDKHIEIII
RQMLRRVTIIESGDAELLPGELVERGRFETENRRVVSEGGHPASGRPQLMGITKASLATE
SWLSAASFQETTRVLTDAAIHAKSDPLLGLKENVIIGKLIPAGTGLPRYRNIRVEPTEEA
KAAMYSAVGYDDYDISPFGAGSGQAVPLEDYDYGPYTG
NT seq
3897 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgatgagctgcgtatcggcctggcgaccgccgacgacatc
cgccagtggtcccacggtgaggtcaagaagcccgagaccatcaactaccgcaccctgaag
ccggaaaaggacggactcttctgcgagaagatcttcggccccacccgggactgggagtgc
tactgcggtaagtacaagcgcgtccgcttcaagggcatcatctgcgagcggtgcggcgtc
gaggtgacccgtgccaaggtccgccgcgagcggatgggccacatcgagctggccgccccg
gtgacccacatctggtacttcaagggtgtgccgagccggctgggctacctgctcgacctg
gcgccgaaggacctggagaaggtcatctacttcgccgcctacatgatcacctgggtggac
gacgagcgccgcacccgtgacctgccgtcgctggaggcccatgtctccgtcgagcgccag
cagatcgagcagcgccgcgacgccgacctggagtcccgcgccaagaagctcgaggccgac
ctgggcgagcttgaggccgagggtgccaaggccgatgtgcgccgcaaggtgcgcgagggt
gccgagcgcgagatgaagcagctgcgcgaccgcgcccagcgcgagctggaccggctcgac
gaggtgtggagccgcttcaagaacctcaaggtccaggacctcgagggcgacgagctgctc
taccgcgagctgcgcgaccgcttcggcacctacttctccggtgcgatgggcgccgccgct
ctgcagaagcggctcgagtccttcgacctggaggaggaggccgagcgcctccgcgagatc
atcaagaccggcaagggccagaagaagacccgtgcgctcaagcgcctcaaggtcgtctcc
gccttcctgcagacccgcaacaagcccaacggcatggtgctggactgcgtcccggtgatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctc
aacgacctgtaccgccgtgtgatcaaccgcaacaaccggctgaagcgtctgctggacctc
ggtgcccccgagatcatcgtgaacaacgagaagcggatgctccaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggtcgtccggtcaccggtccgggcaaccgtccgctgaag
tcgctgtccgacatgctcaagggcaagcagggccgcttccgtcagaacctgctcggcaag
cgagtcgactactcggcccgttcggtcatcgtcgtcggcccgcagctcaagctgcaccag
tgcggtctgcccaaggccatggcgctggagctcttcaagccgttcgtgatgaagcgcctg
gtggacctcaaccacgcgcagaacatcaagtcggccaagcgcatggtcgagcgtgcccgc
cccgtggtgtgggacgtcctcgaagaggtcatcgccgagcacccggtgctgctgaaccgt
gcaccgaccctgcaccgcctgggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctggtctgcaccgccttcaacgcggacttcgacggtgaccag
atggccgtccacctgccgctgtcggcggaggcccaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctcaagccggccgacggccgccccgtgaccatgcccacccaggac
atggtgctcggcctcttcttcctcacctcggaccgtgaggacgtgaagggcggcggccgc
tcgttcacctcgaccgccgaggccatgatggccttcgacgcccgcgagctggacctgcag
gcgcagatcgacgtccggctgcccgccggcaccatgcctccgcgcggctggaccgcaccg
gtggacgaggagaccggcgcaccgacctggatcgagggcgagcccttcaggctctccacc
accctgggtcgcgccctcttcaacgagctgctgcccgaggactaccccttcgtcgactac
gaggtcggcaagaagcagctgtcggcgatcgtcaacgacctcgccgagcgctaccccaag
gtgaccgtcgcggccaccctggacaacctcaaggcggccggcttccactgggccacccgc
tccggtgtcaccgtgtcgatctccgacgtcgtggtgccgccgagcaagccccagatcctg
gagggctacgaggcgcaggccgagaagatccagaagcagtacgagcgcggtctgatcacc
aacgacgagcgcaagcaggagctcgtcgcgatctggaccaaggcgaccaacgaggtcgcc
gaggcgatgaacgcgaacttcccgaagaccaaccccatcttcatgatggtggactccggg
gctcgtggaaacatgatgcagatgcggcagatcgcgggtatgcgtggtctggtgtccaac
gccaagaacgagaccatcccgcgtcccatcaaggcctcgttccgtgagggcctcaccgtg
ctggagtacttcatctccacccacggtgcccgtaagggtctcgccgacaccgctctgcgt
accgccgactcgggctacctcacccgtcgtctggtcgacgtctcgcaggacgtgatcatc
cgcgaggaggactgcggcaccgagcgcggcctcaagctggagatcgcctcggtgggcacc
gacggtgtgctgcgcaaggccgacgacgtcgagaccagcgtgtacgcgcgctgcctcgcc
gaggacatcaccgtcgacggccaggtgctggcccaggccggcaccgacctcggcgatgtg
ctgatcgacgagctggtccgccacggtgtctccaccgtcaagacccgctcgatcctcacc
tgtgagtccgcggtcggcacctgcgccatgtgctacgggcgttcgctggccaccggcaag
ctggtggacatcggcgaggccgtcggcatcatcgccgcccagtccatcggtgagcccggc
acccagctgaccatgcgtaccttccacaccggtggtgtggccggtgacgacatcacccag
ggtctgccccgtgtcgtcgagctctttgaggcccgtacccccaagggtgtggccccgatc
agcgaggcggccggccgggtccgggtcgaggacaccgagaagacccgcaagctcgtcgtc
acccccgacgacggcagcgaggagatcgcctacccggtctccaagcgtgtgaagctgatg
gtcagcgagggcgagcacgtcgaggtcggccagaagctgaccatgggtgccaccaacccg
cacgacgtgctgcgcatcctgggtcagcgggccgtccaggtccacctggtccaggaggtc
cagaaggtctacaactcgcagggtgtgtcgatccacgacaagcacatcgagatcatcatc
cggcagatgctccgccgggtgacgatcatcgagtccggcgacgccgagctgctgccgggc
gagctggtcgagcgcggccggttcgagaccgagaaccgccgcgtggtgtccgagggcggt
caccccgcctccggtcgtccgcagctgatgggtatcaccaaggcctcgctggccaccgag
tcctggctgtcggccgcctccttccaggagacgacccgggtgctcaccgacgcggcgatc
cacgccaagtcggacccgctgctgggcctcaaggagaacgtcatcatcggtaagctcatc
ccggccggtacgggtctgccccgctaccgcaacatccgggtcgagcccaccgaggaggcg
aaggccgcgatgtactcggccgtcggctacgacgactacgacatctcgcccttcggcgcc
ggctccggccaggcggttccgctggaggactacgactacggcccgtacaccggctga
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integrated database retrieval system
