Peterkaempfera podocarpi: AB0761_31380
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Entry
AB0761_31380 CDS
T11007
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ppod Peterkaempfera podocarpi
Pathway
ppod03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ppod00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AB0761_31380 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppod03400
]
AB0761_31380 (ligD)
Enzymes [BR:
ppod01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AB0761_31380 (ligD)
DNA repair and recombination proteins [BR:
ppod03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AB0761_31380 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
RhiE-like_linker
Motif
Other DBs
NCBI-ProteinID:
XHM96153
LinkDB
All DBs
Position
complement(7131963..7132865)
Genome browser
AA seq
300 aa
AA seq
DB search
MPDRIATTVDGRRLALGNLEKVLWPATGFTKGEALHYYALVAPALLPQVCRRPASFVRFP
DGVEGELFHIKHPPPGLPEWAPTAEIHGKEGTRRQVLVDDMATLMALANLAALEVHVPQW
TVDGGRNAHDRLVVDLDPGPGVGLPECCRVACLVRSALAEDGLECWVKTSGSKGLHLYAP
IAPAPGRLVSDYARALAQRLEADRPDLVLHRMARQLRQGKVFVDWSQNASAKTTAAAYTL
RAGRTPAVSAPVGWDEVAGCTRAEDLSFTPGQVLARIERDGDLFAALADPGRARPLPPAS
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atgccggaccggatcgccacgacagtcgacggccgccgactggctctcggcaacctggag
aaggtcctctggccggcgaccggcttcaccaagggcgaggcgctgcactactacgccctg
gtggcccccgcactgctgccgcaggtgtgccgccgccccgcgtcgttcgtgcggttccca
gacggtgtcgagggcgagctcttccacatcaagcacccgcccccggggctgccggagtgg
gcgcccaccgcggagatccacggcaaggagggcacccgccgccaggtgctggtggacgac
atggcgacgctgatggcgctggcgaacctggcggcactggaagtgcacgtcccccagtgg
accgtggacggcggacggaacgcccatgaccgcctggtggtggacctcgaccccgggccg
ggcgtgggcctgccggagtgctgccgggtcgcctgcctggtccgctccgcactggccgag
gacgggctggagtgctgggtgaagaccagcggctccaagggcctgcacctgtacgcaccg
atcgcaccggcacccgggcggctggtctccgactacgccagggcactggcgcagcgcctg
gaggccgaccggcccgacctggtgctgcaccggatggcgcggcagctgcgacagggcaag
gtgttcgtcgactggagccagaacgccagcgccaagaccaccgcggcggcctacaccctg
cgggccggacgcacccctgccgtctcggcgcccgtcggctgggacgaggtggccggctgc
acccgtgcggaggacctctccttcacccccgggcaggtgctggcccgcatcgaacgggac
ggtgacctcttcgccgccctcgccgatcccggccgcgcccggcccctgcctccggcgtcc
tga
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