Peterkaempfera podocarpi: AB0761_31975
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Entry
AB0761_31975 CDS
T11007
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ppod Peterkaempfera podocarpi
Brite
KEGG Orthology (KO) [BR:
ppod00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppod03016
]
AB0761_31975
Enzymes [BR:
ppod01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
AB0761_31975
Transfer RNA biogenesis [BR:
ppod03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
AB0761_31975
Prokaryotic type
tRNA splicing ligases
AB0761_31975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
XHM94606
LinkDB
All DBs
Position
7268365..7269777
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AA seq
470 aa
AA seq
DB search
MDISRTGPYELRVEQQGAMRVPGVVYATRELLSDAGQSLEQVRNVATLPGIVLASYAMPD
IHWGYGFPIGGVAATDPAQGGVVSPGGVGFDISCGVRLLAADLSAEELAPALGRLMDALD
PVVPRGMTRGAVWDLHEPGELRRILVAGSRHAVERGHGDQRDLDRCEDGGAVDGADPGQV
SERALERGLHQVGSLGSGNHFLEVQRVDAVYDTEVAEAFGLRPGQVCVMIHCGSRGLGHQ
ICTDHVRRMEQRMPHHGITVPDRQLACAPVDSPEGRAYLGAMAAAANYGRANRQLLADAA
RRVFAQLLGAGLELVYDISHNLAKLERHEVDGATRLLCVHRKGATRALPPGHPDLPADLR
GHGQPVLIPGTMGTASYVLTGIPGGRAFHSTCHGAGRTQSRHQAARGVSGRELRDRLEAE
GIAVRPSSWRGLAEEHPGAYKDVDAVVEAGEGAGLCRRVVRLTPLGVVKG
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atggacatcagccggaccggcccctatgagctcagggtcgagcagcagggcgcgatgcgc
gtcccgggggtggtgtacgccacccgggagctgctcagcgacgcgggccagtcgctggag
caggtccgcaatgtggccaccctcccgggcatcgtgctggcctcgtatgcgatgccggac
atccactgggggtacggcttcccgatcggcggggtcgcggccaccgaccccgcgcagggc
ggtgtggtctccccgggcggggtggggttcgacatctcctgcggggtgcggctgctcgcc
gccgacctctcggcggaggaactcgcacccgccctcgggcggctgatggacgccctggac
ccggtcgtcccccgtgggatgacccgcggcgcggtctgggacctgcacgaacccggcgaa
ctgcggcgcatcctcgtcgccggctcccgccacgccgtggaacgcggccacggcgaccag
cgcgacctggaccgctgcgaggacggcggcgcggtggacggagccgatcccggccaggtg
agcgaacgggccctggagcgggggctgcaccaggtcggcagcctgggctcgggcaaccac
ttcctcgaggtgcagcgggtggacgcggtctacgacaccgaggtcgccgaggcgttcggc
ctgcgccccggccaggtgtgcgtcatgatccactgcggttcccgcgggctgggccaccag
atctgcaccgaccatgtgcgccggatggagcagcggatgccgcaccacgggatcacggtc
ccggaccggcagctggcctgcgcccccgtggactccccggaggggcgtgcctacctggga
gccatggcggccgccgccaactacggccgggccaaccgccaactgctcgccgacgccgcc
cgcagggtcttcgcccagttgctgggggccggcctggagctggtctacgacatctcgcac
aacctcgccaagctcgaacggcacgaggtcgacggtgcgacccgtctgctgtgcgtccat
cgcaagggcgccaccagggcgctgccgccgggccaccccgacctgccggcggacctgcgc
ggccatgggcagccggtgctgatccccggcaccatgggcaccgcctcctatgtgctcacc
ggcatcccgggcggccgggcgttccactccacctgccatggggccgggcggacgcagagc
cgccaccaggcggcccgcggagtcagcggccgggagctgcgggaccgtctggaggccgag
ggcatcgcggtccggccgtcctcctggcgggggctggcggaggagcatccgggtgcctac
aaggacgtggatgccgtggtggaggcgggcgagggcgcaggactgtgccggcgggtggtc
cggctgacaccgctcggggtcgtcaagggatag
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