Peterkaempfera podocarpi: AB0761_36685
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Entry
AB0761_36685 CDS
T11007
Name
(GenBank) polysaccharide lyase family protein
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
ppod Peterkaempfera podocarpi
Brite
KEGG Orthology (KO) [BR:
ppod00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
AB0761_36685
Enzymes [BR:
ppod01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
AB0761_36685
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Gene cluster
GFIT
Motif
Pfam:
CBM-like
fn3_3
RhgB_N
CarboxypepD_reg
Rhamnogal_lyase
EMC7_beta-sandw
Motif
Other DBs
NCBI-ProteinID:
XHM95437
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Position
8409444..8411354
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AA seq
636 aa
AA seq
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MGDMNGMSRRRFAYGAATVAGAALVPLTFGASAARADGSSLSYQDTSTSITATNGVVTFT
LRKSDGAMTSLKLSGTELMANGGYAYWDTNETVFGYFVLGHHEPSLTTYSVRQGSNFLDI
AMAHPATAAMPLTLVQHYILKDGEPGVHIATEISHKAGDAADSIAQARTVFRLDPAIFTN
ISVEDDPIGVTWRQSSSTLPTPANLKAAPAVMDSTFDLQGLGSPYGRRYYTKYDWSVYWK
DHVVHGLYGNGFGAWLTMPNKEAENGGPLRQDLTAHQTTDSPVLLNMIQASHFGSKPMDA
VGDWGKTYGPYFLYLNQGNDGAAMRADAVKWANPALHQDFWDNLALPGWVTTSQRGTVKG
KLHMTHGSVRGATVVLSDNNIEFQRASSGYQYWVDAEPDGSFKLTGVRPGTYRLSAYRPG
TFGEFQLDDVHVGAGQTVSMPPLSWVPPTAGETVWQVGTPTRTSVEFRNGCEFREYGLNQ
SFTQSFPGGVVNYMAGQSTVRNWNYVQYQQVNGTTMPAWRVEFNLRQTPRPGATATLTVA
LASWSLSNAFTPPAGTVGQLNITVNGNATFAWPIEQTEASNASYRGACSGLYLQRQFAFD
ASVLESGQNEVVFQINDPSNGQVNDVLYDAIRLEID
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgggcgacatgaacggcatgagccgtcgacgctttgcctacggggcggccacggttgcc
ggcgcggcattggtgccgctgaccttcggggcttccgcagcccgcgccgatggcagcagc
ctctcctaccaggacacgtccacgtcgatcacggcgacgaacggggtggtcaccttcacc
ctgcgcaagtccgatggcgcgatgacctcgctcaagctctcaggcacggaactcatggcc
aacggcggctacgcgtactgggacaccaacgagacggttttcgggtatttcgtgctcggc
caccacgagcccagcctgacgacctactccgtccgtcagggctcaaacttcctcgacatt
gccatggcgcacccggccacggcggcgatgcctctgacgctcgtccagcactacatcctc
aaggatggggaaccgggcgtccacatcgccaccgagatctcccacaaggcgggtgacgct
gctgacagcatagcccaggcacgaaccgtcttcaggctggatcctgcgatattcacgaac
atctcggtcgaggacgatccgatcggggtcacgtggcgtcagtccagttcgactcttccg
acgccggccaacctcaaggccgcgcctgcggtgatggactcgacctttgacctgcagggc
ctgggatcgccctacgggcgccgttactacacaaagtacgactggtcggtctactggaag
gaccacgtcgtgcacggcctgtacggcaacggttttggtgcctggctgacgatgccgaac
aaggaggctgagaacggtggccccctgcggcaggaccttacggcgcaccagaccactgac
tcgcctgtgctgttgaacatgatccaggcatcacattttggctcgaagcccatggatgcg
gtgggcgactgggggaagacctacggcccgtacttcctgtatctgaaccagggcaatgac
ggggcggccatgcgcgctgacgcggtgaagtgggccaaccccgccttgcatcaggacttc
tgggacaacctggcgctcccgggctgggtgaccacgagtcagcggggaaccgtcaagggc
aagctccacatgactcatggttccgttcggggagccacggtggtgctctccgacaacaac
atcgagttccagcgtgcctccagcggctaccagtactgggttgatgccgagcccgacggc
agcttcaagctgaccggtgtgcgccccggcacctatcggctttcggcgtaccgaccgggg
acgttcggcgagttccagttggacgacgtgcacgtcggcgccggccaaactgtgtccatg
cccccgctgagttgggtgccgccgactgccggcgagacagtctggcaggtgggcacgccc
acccgtacttcggtagagttccgcaatggctgcgagttccgcgagtacggcctgaaccag
tcgttcactcagtccttccctgggggagtggtgaactatatggccgggcagagtacggtc
cggaactggaactacgttcagtaccagcaggtcaacggcaccacgatgccggcctggcgc
gtggagttcaacctgcgccagacaccacgcccgggggcgactgccactttgacggttgcc
cttgcctcctggtctctgagcaatgccttcacaccgccggcgggaaccgtcggacagctg
aacatcacggtgaacggcaatgcaacgttcgcctggcccatcgagcagaccgaggcgagc
aacgcctcctaccgcggtgcctgctccggtctgtacctgcagaggcagttcgcgttcgac
gcctccgtcctggaaagtgggcagaacgaggtcgtcttccagatcaacgacccgagcaac
ggccaggtcaacgacgtcctctatgacgccattcgcctggagatcgattga
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