Paenibacillus polygoni: QPK24_00225
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Entry
QPK24_00225 CDS
T09587
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ppog
Paenibacillus polygoni
Pathway
ppog03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppog00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QPK24_00225 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppog03400
]
QPK24_00225 (mfd)
Enzymes [BR:
ppog01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QPK24_00225 (mfd)
DNA repair and recombination proteins [BR:
ppog03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
QPK24_00225 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
MFD_D3
SecA_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WIV19282
LinkDB
All DBs
Position
49119..52643
Genome browser
AA seq
1174 aa
AA seq
DB search
MLQALIDAYSKDSDFESIASGVTSGMKEQLISGLTGSARQIMIAALHKHLDRPMLVVTHN
MFAAQKVADDLQEALSADQVLLYPANELIAAEAAISSPETLAQRIDVLLKCAKGFRGIVV
IPLSGARRYLPSPEIIANAEITLQQGGTLELDSFLRGMVELGYERVERVETQGEMSIRGG
IIDFFPVTSGLAYRVELFDDEIDSIRTFDPIDQRSIDKINQVVITPCKELIANEAKMKQA
ADRAAILLEEQLEKTTDRQAKLRLRDEIHREIELLREHVYFPEIYKYVTELYPEKQTIYD
FMPQDTVLIFDEPARLLETGKQLERDESEWSMHLLQNGKTLPQLTLSLDHEEVLYKRPFQ
TLFISVFLRQVPHTLPQNILNMVSRSMQDFHGQMNVLKAEMERWQKAGVQVFMLASSEER
LDRMRRVLQDYDIHEPTMMIGSLQSGFEMPSIHLAVITEGEMFSQKQRKVRKPIRNVDNA
ERIKSYSELKVGDYVVHQNHGIGKYMGIGTLEVGGIHKDYMHILYAGGDKLSVPIEQIDL
IQKYVGSEEKEPKIYKLGGNDWTRVKNKVRSSVQDIADDLIKLYAARQSSPGYAFEKDTA
EQQEFEDLFPYDETRDQERAIEEIKKDMEQSRPMDRLLCGDVGYGKTEVAIRAAFKAAIE
GKQVAVLVPTTILAQQHYETFRERFSGYPFNVSVLSRFRSRKEQNETTKGIKDGTIDIVI
GTHRLLSQDLVFKDLGLLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSML
GVRDLSVIETPPENRFPVQTYVVEHSQTLVREAIERELARGGQVYYLYNRVQGIQEMAAE
ISDLVPGAKVGVGHGQMTESELEKTILDFLDGEFDVLVSTSIIETGVDIPNVNTLIVHDA
DKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMR
DLTIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEINKRKVTMLGEEAPQESSWTTAIDLA
IDAYLPSDYIYDSIQKIEIYKKVAVLASFDDTMELEDELVDRFGDLPEAVTNLLTVARLK
IYGKAYGIESIVQRGDDITLKFYEGQENAVNGVKLIQIGNQFERRVQFEQGQSMSIHVKG
KGLSDLELLQLLEKFLAAMKDAFKSKGELQDVAK
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
ttgctacaagcacttattgatgcctattccaaagattctgattttgaatcgattgcatcc
ggcgttacgtcgggaatgaaggagcagttgatctccggtttgactgggtcggctcgtcaa
atcatgatagctgccttacacaagcatctagatcgaccaatgctcgttgtgacccataat
atgtttgcagcgcagaaagtggcagatgatctacaggaagcgctttctgcagatcaagtc
cttttataccctgcaaacgagttaattgctgcggaggcagctatatcaagtccagaaacc
cttgcacagcgtatagatgttctcctcaagtgtgccaaaggatttcgtggtattgtcgtt
attcctttatcgggagctcgccggtatttaccttctcctgagattattgcaaatgcggaa
attacattacagcagggcggaacgcttgagctggattccttccttcgcggtatggtggag
ctgggatatgaacgagttgaacgcgtagaaacacaaggagagatgagcatccgtggaggg
atcattgacttcttccctgtgacttctgggcttgcttatcgtgtggaattatttgatgat
gagattgattcgatacgtacctttgatccgatagatcagcgttctattgataagattaat
caggttgtcattacaccttgcaaggaattaattgcaaacgaagcgaaaatgaagcaagcc
gcagatcgagcggccattttgcttgaagaacaattagaaaagacgaccgaccggcaggcg
aaacttcgtctacgcgatgaaatccatcgtgagatcgaactgctgcgtgaacatgtctat
tttcctgaaatatataaatatgtaacagagttataccctgagaaacaaactatctatgac
tttatgccccaggatacagtcctgatatttgacgagccggccaggcttctggaaacggga
aaacaacttgagcgggatgagtccgagtggagtatgcatttgctccaaaatggcaaaacg
ctgccacagcttactctttcccttgatcatgaagaagttttatataaacgtccattccag
acgttatttatttctgttttcctaagacaggttccacatacattacctcagaacattctg
aacatggtcagccgcagtatgcaggacttccatggccaaatgaatgtgctaaaagcggaa
atggagcgctggcaaaaagcaggcgtacaggtctttatgctggcaagcagcgaagaacga
ctggaccgaatgcgccgtgtattacaggattacgatatacatgaaccgaccatgatgatc
ggcagcttacagagtggttttgagatgccttcgattcatttagccgtcattacggaaggc
gagatgttctcccaaaaacaacgtaaagttcgcaaacctattcgtaatgtagataatgca
gaacgtattaagagttacagtgaacttaaggttggggattatgttgtccatcagaaccac
ggtattggtaagtatatggggatcggcacattagaagtaggtggaatccataaggattac
atgcatattctatatgctggcggagataagctgtctgttcctattgaacagattgacctc
atccagaagtatgtaggatcagaagagaaagaaccaaaaatctataaacttggcggcaat
gactggacacgtgttaaaaataaagttcggagttctgttcaggatatagcggatgatttg
atcaaactgtatgcagctcgtcaatcttcacctggttatgcctttgaaaaagatacggcc
gaacagcaggaatttgaagatttattcccttatgatgaaacaagggatcaggaaagagca
attgaagaaattaaaaaagacatggaacaaagtcgtcctatggatcgtttattatgcggg
gatgtaggatacggcaaaaccgaagtagccatccgagctgcattcaaagcagcaatcgaa
gggaaacaggttgcagtacttgttcctacaacgattcttgcgcagcaacattatgaaaca
ttccgtgagcgtttttctggatatccatttaatgtgagcgttctgagccggttccgttct
cgtaaggaacagaatgagacgacgaagggaatcaaggatggaactattgatattgtaatc
ggtacgcatcgtttattatctcaagaccttgtctttaaagatctggggctgctgattgtg
gatgaggaacaacgttttggggtgactcataaagaaaagctcaagaagctgaagacgaat
gtggacgtactaacactaacggcaacaccaattcctcgaacccttcatatgtctatgctg
ggtgtacgtgacttatcagttattgagacgcctccagaaaaccgtttccctgtgcagacc
tatgttgttgagcacagtcagactttggttcgggaagctatagagcgggaactggcaaga
ggcgggcaagtgtactacctatataaccgtgttcaaggaattcaagagatggctgcggag
atttcagatcttgtccctggcgcaaaagtcggtgtggggcatgggcagatgacagagtcc
gaacttgagaagacgattcttgattttctggatggagagtttgacgtgcttgtcagcacc
agtattattgaaacaggggttgatatcccgaacgtcaatacattgatcgtacatgatgct
gataaaatgggactttctcagctgtatcagctgcgcggacgagttggacgttccaaccga
atagcgtatgcctattttacgtatcaaagggataaagttctgacagaagtagcagaaaaa
aggcttcaatccatcaaggagtttacagagcttggctccggtttcaaaattgctatgcgg
gatctaacgattcggggagctggaaacctgcttggagcagagcagcacgggtttatcgcc
tcagtcggttttgatctctactcacagatgctcgccgaagaaattaataaacgtaaagtg
accatgctgggtgaggaagctccacaagaatccagctggacaacagccattgatctagcg
atcgatgcttacttaccatctgattacatctatgacagcattcaaaaaattgaaatttac
aaaaaagtggctgttcttgcttcctttgatgatacgatggaattagaagatgaactggtg
gatcgttttggtgatttaccagaggcagttacgaatttgctcactgtggcgagacttaaa
atctatggtaaagcctatggtattgagtcgattgtacagcgaggagatgacataacttta
aaattctatgagggtcaagaaaatgctgtaaatggagtaaaacttattcagattggaaat
cagtttgaaagacgtgtacaatttgaacaaggacaaagtatgtctattcatgtaaaaggt
aaaggactcagcgatttggagcttcttcaattgctagagaaattccttgcagccatgaag
gatgcttttaaatcaaagggggaacttcaagatgttgcgaagtaa
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