Paenibacillus polygoni: QPK24_05080
Help
Entry
QPK24_05080 CDS
T09587
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
ppog
Paenibacillus polygoni
Brite
KEGG Orthology (KO) [BR:
ppog00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppog03016
]
QPK24_05080 (thpR)
Enzymes [BR:
ppog01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
QPK24_05080 (thpR)
Transfer RNA biogenesis [BR:
ppog03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
QPK24_05080 (thpR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
RHH_5
Motif
Other DBs
NCBI-ProteinID:
WIV20093
LinkDB
All DBs
Position
1062807..1063379
Genome browser
AA seq
190 aa
AA seq
DB search
MTQMPQDKVRIFTAVSLPDHVKEEIQRWTIDNKDKLSFRNFTHKEDYHITLQFLGDTERG
TINALCEALREAAVKMQQFPLSVGDAGVFGSPLRPRVLWRGVEGEIDELAVLFQYILDAT
APLGYISENRPYRPHITIARKFDDSKKINWNLEKFPAQEKIEPWLVKDFVLFQTILGQKP
MYKIIEKFDF
NT seq
573 nt
NT seq
+upstream
nt +downstream
nt
atgacgcaaatgccacaagataaagtacgcatcttcacagctgtttctctaccagatcat
gtgaaagaagaaatacagcgctggacaatcgataataaagataaactttccttccgtaat
tttacacataaagaagattatcatattacacttcaatttttaggggatacggaaagaggt
accattaacgcgctgtgtgaagctctgcgagaagccgctgttaagatgcaacagtttcct
ttaagtgttggagatgcaggtgtttttggttcgccattacgtcctagggttttatggaga
ggagtcgaaggagagattgatgagctcgctgtgcttttccagtatattctagatgcaact
gctccgttaggatatatttctgagaatcgtccttatcgaccccatattacgattgctcgc
aaatttgatgattctaagaagattaattggaacttggagaaatttccggcacaggaaaaa
attgaaccatggcttgtcaaagactttgtattatttcagacgatacttggtcaaaaaccg
atgtataaaataatcgagaaatttgatttttga
DBGET
integrated database retrieval system
