Paenibacillus polygoni: QPK24_06630
Help
Entry
QPK24_06630 CDS
T09587
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ppog
Paenibacillus polygoni
Brite
KEGG Orthology (KO) [BR:
ppog00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppog03016
]
QPK24_06630
Enzymes [BR:
ppog01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
QPK24_06630
Transfer RNA biogenesis [BR:
ppog03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
QPK24_06630
Prokaryotic type
tRNA splicing ligases
QPK24_06630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
PqqA
Motif
Other DBs
NCBI-ProteinID:
WIV20363
UniProt:
A0ABY8X856
LinkDB
All DBs
Position
complement(1360955..1362181)
Genome browser
AA seq
408 aa
AA seq
DB search
MFEAIGKYNTAKIFTSHLEETAYGQVLELCNQKAFEGAKVRIMPDSHAGKGCVIGYTQQL
KGRVVPNLIGVDIGCGMEVTYLGKIEIDFARLDHFIRHKVPHGHSIHQKVMHKLEKPALQ
EQIKRISKKTGTDYEKHQRSIGSLGGGNHFIEINVDSEGNKILVIHSGSRNLGLQVATYH
QKKAERYCTSRLQELMEQREEELRLLRASGDADSIPAVIQKYDAELELYRVPKPLMFLEG
AGADEYLEDMYAAQEFALLNRRGMSKAIAEFLQLDYKNLDKFTTIHNYINPEDKIIRKGA
ISAKKDEKVIIPINMRDGSIIAIGKGNPDWNYSAPHGAGRLMSRSRAKDLIHMNDFKDTM
RDVWTSSVSTKTLDEAPMAYKPIEEILENTKDALEIVEIIKPLYNFKA
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaagcgatcggaaagtataatacagctaaaattttcacatcacacctggaggaa
acggcctacggccaagtgcttgaactatgtaaccagaaagcctttgaaggagcgaaagtt
cgtatcatgccggactcccatgccggaaaaggttgcgttatcggctacactcaacaatta
aaaggtcgggtcgttcctaatctcatcggcgttgatattggatgtggtatggaggtaacc
tatcttggaaaaatagaaattgattttgctcgactggatcattttatcaggcacaaagtt
ccacatggtcactccatccatcaaaaggtgatgcataaactggagaaacctgctctccag
gaacagatcaagcgaatctctaaaaaaacagggacagactatgaaaaacatcagcgaagc
attggttctcttggcggaggcaaccattttatagagattaatgtagattcggaaggtaac
aaaattctggtcattcactcgggaagccggaatctgggccttcaagtggcaacttaccat
cagaaaaaggcagaacgttattgcaccagccggttacaagagctcatggagcaacgcgag
gaagaacttcgcttattacgtgcttctggggatgcagactctatcccagctgttattcaa
aagtatgacgcggagctggaactctacagagtgcccaaaccgctgatgtttcttgaaggt
gcaggggctgatgagtacttagaagatatgtatgccgctcaagagtttgctttgctaaat
cgtcggggcatgtccaaagcaattgctgaatttttgcagctcgactacaagaatctagac
aaattcactaccattcataactatattaacccagaagataagatcatacggaagggtgcc
atttcagccaaaaaagatgaaaaagtgattattccgatcaatatgcgtgacggttccatt
attgcgattggaaaaggaaatccggattggaactattctgctccccatggggctggaaga
ctcatgagccgctcacgtgcgaaagacctcattcatatgaatgattttaaggataccatg
cgtgatgtgtggacttcttccgttagtaccaaaacgctcgatgaagcccctatggcttat
aaaccgatcgaggagattttggagaatacgaaggatgcgctggagatagtagagattatt
aaacctttatataattttaaggcgtag
DBGET
integrated database retrieval system
