Paenibacillus polygoni: QPK24_08170
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Entry
QPK24_08170 CDS
T09587
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ppog
Paenibacillus polygoni
Pathway
ppog03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppog00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QPK24_08170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppog03019
]
QPK24_08170
03009 Ribosome biogenesis [BR:
ppog03009
]
QPK24_08170
Enzymes [BR:
ppog01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QPK24_08170
Messenger RNA biogenesis [BR:
ppog03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QPK24_08170
Ribosome biogenesis [BR:
ppog03009
]
Prokaryotic type
rRNA helicases
QPK24_08170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WIV20644
LinkDB
All DBs
Position
1699617..1701209
Genome browser
AA seq
530 aa
AA seq
DB search
MTTFSEFNLEPKVLQAITELGFEEATPIQSKSIPLALGGSDLIGQAQTGTGKTAAFGIPL
ISKIDRADEKIRALIMAPTRELAIQVAEEIEKLSRFKGIRTLPIYGGQDIVRQIRALKKK
PQVIIGTPGRLLDHINRKTIKLEDVQTVVLDEADEMLDMGFMEDIQSILKQVPDERQTML
FSATMPPNIQKLAQQFLKNPEHVSVIPKQVSAPLIDQSYIEVPERQKFDALSRLLDMESP
ELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATDVA
ARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGAAYSFVTPREIDHLHFIERVTR
HRIPRKPLPTLAEAIEGKQRVTAERLLEIVQDGELNEYKGIAIQMLEQYDSVQLLSAALK
LLTGDKKDATIELTPEDPIRAKRRKPDVRSSGRKPSGGYGGNRSGGYNRSGSGSSNRGGY
NSGGRKEGGYNRDRDRDRKPRSYSSNNSAGNNSNNNSGERRPRREDSSFE
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
ttgacaactttctcagaatttaatttggaacctaaggttctgcaagcaattacggaacta
ggattcgaagaagcaacacccattcaatcgaaatcaatcccattagcacttggcggaagt
gatttgattggacaagcacaaacaggtacaggtaaaacggctgcgtttggtattccactc
atcagcaaaatcgacagagctgacgaaaaaattcgtgccctgattatggcacctacccgt
gaacttgctattcaagtagcagaagaaatcgagaaactttctcgttttaaagggatccgc
actcttccaatctacggcggtcaagatatcgttcgccaaattcgcgctttgaaaaagaaa
ccacaagtgattatcggtacaccgggtcgtttgcttgaccatatcaaccgtaaaacaatc
aaacttgaagatgtacaaactgttgtactggacgaagctgatgaaatgctcgatatggga
ttcatggaagatatccaatcgatcctgaaacaagttccagacgagcgtcaaacgatgttg
ttctcggctacaatgcctcctaacattcaaaaacttgcacaacaattcttgaaaaaccca
gagcacgtatccgttattcctaaacaagtaagcgcaccgcttatcgatcaatcttatatc
gaagtacctgaacgtcaaaaatttgacgcgctgagccgtttgcttgatatggaatctcct
gagcttgctatcgtattcggtcgtacaaaacgccgtgtagacgagcttgcagaagctttg
caaaaacgtggatactctgcagatggtttgcatggtgacctttctcagaatcaacgtgac
gctgtaatgcgtaaattccgtgatggaagcattgatgtactcgtagctacagacgtagca
gctcgtggacttgacgtttctggcgtaacgcatgtagtaaactttgaccttccacaagat
cctgagagctatgttcaccgtattggtcgtacaggccgtgcaggtaaagaaggggcagct
tactctttcgtaactccgcgtgaaattgatcatttgcacttcatcgagcgtgtaactcgt
caccgcattccgcgtaaaccgcttcctacacttgctgaagcaattgaaggtaaacaacgc
gtaactgcagagcgtcttcttgaaattgttcaagatggtgaactgaacgagtacaaaggt
attgcgattcaaatgcttgagcagtacgattctgtacaactcttatctgcagctctgaaa
ctccttacaggagacaaaaaagatgcaacgatcgaacttacacctgaggatccgattcgt
gcgaaacgtcgtaaaccagatgttcgttctagtggacgtaagccttctggcggttacggt
ggtaatcgcagcggcggatacaaccgcagcggcagcggaagcagcaaccgaggcggatac
aacagtggtggacgtaaagaaggcggatataatcgtgaccgtgatcgtgatcgcaaaccg
cgttcttatagcagcaataacagtgctggcaacaacagcaataacaatagcggtgagcgc
agacctcgtcgtgaagattcttcatttgaataa
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