Paenibacillus polygoni: QPK24_09565
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Entry
QPK24_09565 CDS
T09587
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
ppog
Paenibacillus polygoni
Brite
KEGG Orthology (KO) [BR:
ppog00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppog03019
]
QPK24_09565 (hrpB)
Enzymes [BR:
ppog01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
QPK24_09565 (hrpB)
Messenger RNA biogenesis [BR:
ppog03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
QPK24_09565 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Flavi_DEAD
AAA_30
Zeta_toxin
HA2_N
Motif
Other DBs
NCBI-ProteinID:
WIV20897
LinkDB
All DBs
Position
1988229..1990760
Genome browser
AA seq
843 aa
AA seq
DB search
MRKTIWNQDHDLPIYQVIPDIKSTFHQKKSAVLVAEPGAGKTTVVPLALLEEEWMQHKKI
IMLEPRRLAARNAAMRMARSIGESVGETVGYRVRMDSKVSSDTRIEVVTEGILTRMLQHD
QALEEVGLLIFDEFHERNLHGDLALALALECQSVLREDLRILVMSATLEAEPVTSLLGDA
ALITCTGRTFPVETKYMPKLHHLDMETHMAQVIPLALTQQEGHVLAFLPGAKEIHRVMRM
LEGQNLGPGVKVYPLYGALSQQEQDRAITAADTFERKVILATTIAESSLTIEGIGAVVDS
GLRKDSVFSSRTGMSRLVTIPISKTSADQRKGRAGRTAEGICYRLWSTLEQDAKPEKNRP
EILTADLAPVALELAVWGVQNPEDLRWLDVPPAGAYAAATALLQQLGCLDDRGHVASRGK
QIAGMGTHPRIGHMLLQAAKLGLARDASLLGALLQHGSSRLLGPKAGWDLRPQLEHLRTI
SAAGSASAAFQDEAPLRSLIQESRQLYREVETRQTEGESLPPQEFCGLLLAFAYPDRIGQ
RREDGRYFLSSGRGVRASSAMSGLTAPYIVVAEADDQGADGLIRTCAPLALADIYTYLKE
LITTQEKVFWDKNTRSVRSLQWQKRGEIILKEMAYPNPPEEDILQALLAGIREEGLSVFS
MNKTTHQLVERMQFLHKVNPAWPDLSGSALLEYLLSHIPPYLTGVRSASGLQQISITSVL
LDSLSWEQRQTLEKEAPTHYTVPSGSKIPIRYDGQGAPYIAVRLQEMFGLTESPRLGEGR
VPLTLHLLSPAQRPVQVTSDLNSFWREGYYEVKKDLKGRYPKHYWPEDPLQAVATNRVKP
KGK
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atgcgaaaaacgatatggaatcaagatcacgaccttccgatttatcaagttattcctgat
atcaaaagcacgtttcatcaaaaaaaatcggctgttcttgttgctgagccaggggctggg
aagacaaccgttgttcctctagcattattagaagaagaatggatgcagcataaaaagata
atcatgcttgaacctcgaagactggctgcaagaaatgccgcaatgagaatggcaagaagt
ataggtgaatctgttggggaaacagttggctatcgggttcggatggacagcaaggtaagc
agtgatacccgaatcgaagtagtaaccgaaggaatcttaactcgaatgctgcagcatgat
caggcacttgaagaggtggggcttcttatatttgatgagttccatgaacgcaatttacat
ggtgacttggctttggcactcgcactggagtgtcaatctgtactcagggaagatttacga
attctggtcatgtctgcgacgcttgaagctgaaccggtaacttctctgctcggtgatgct
gcgctgattacttgtacgggaagaacttttccagtagaaacaaagtacatgccaaagctt
catcatctggatatggagacgcatatggctcaggttattccccttgcactgactcagcaa
gaagggcatgtcctggcttttctgcctggggcaaaagaaattcaccgcgtgatgagaatg
ctggagggacagaatctaggaccgggcgtgaaagtatacccactttacggagctttatcg
cagcaagaacaagaccgtgcgatcacagctgcagatacttttgagcgaaaagtaattctg
gccacaacgatcgcggaatcgagtttaactattgaagggattggagcagtcgtagacagc
ggcttaagaaaagattctgtcttttcatctcgtacgggtatgagccgattagtgacaatt
ccaatctctaaaacttccgcagatcagcgaaagggccgggcaggaagaacagcagagggc
atatgctaccgcttatggagtacactcgagcaggatgccaaacctgaaaagaatcgacct
gagatactcactgcagatcttgctcctgtagcgcttgaacttgcggtgtggggtgtgcaa
aacccggaagatttacgctggcttgatgtgccgcctgcgggcgcttatgcggcagcaact
gcgctgcttcagcagctgggctgcctcgatgaccgcggccatgtagctagccgcggcaaa
caaatagcggggatggggacacatccccgcattggacacatgctgctgcaagcggcaaag
cttggactggccagggatgccagtcttctcggcgcgctattgcagcatggatcatcccgc
ctgctcggcccgaaggcgggatgggatcttcgtccgcagttagaacatctgcggacaatc
tctgctgccggctctgcctcggcagccttccaagatgaggccccgctgcgcagcctcatc
caagagagccgccagctgtacagagaggtagagacacgccagacagaaggcgagtctcta
cctccgcaggaattctgcggcttactgcttgcctttgcctatccggaccggatcgggcaa
agaagagaagatggccgctatttcctttcgagcggccggggtgtgcgggcctcttctgcg
atgagcggactcaccgctccttatatcgttgttgcagaagccgatgaccaaggggcagat
gggcttattcgaacctgcgctccgcttgcacttgcggatatatacacttatttaaaagaa
ctcattacaacccaagaaaaagtgttctgggataaaaacacacgcagtgtgcgatcctta
caatggcaaaaacgcggagagattatcctgaaagaaatggcttatccgaatccgcctgaa
gaagatattctacaagccttattagcaggaatcagagaagaaggattgtctgtcttttcg
atgaataaaaccactcatcagctagtggaacggatgcagtttttgcataaagtaaatcct
gcatggccggatctttcgggttctgctctgcttgaatacctgctgagtcatatcccgcct
tacttgacaggggtgcgctccgcatctggtttacagcaaatatccattacatctgtactg
ttagacagcttatcctgggaacaacgacagacacttgagaaggaagctcctactcattac
accgtacccagcggctctaagattcctatcagatatgatggacaaggggctccgtatatt
gctgtcagactgcaggaaatgtttggacttacggaaagcccgcgactgggagaagggcgt
gttcccttaacgcttcatttactatcccctgcgcaaagacctgtacaagttacttcggat
ctgaacagtttttggcgagaaggttattacgaggtgaagaaggatctgaaaggccgatat
cctaaacattactggccggaagatccactgcaggcagtagcgacaaaccgtgttaaaccg
aagggtaaatag
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