Pollicipes pollicipes (gooseneck barnacle): 119089806
Help
Entry
119089806 CDS
T08250
Name
(RefSeq) transcription elongation factor SPT6-like
KO
K11292
transcription elongation factor SPT6
Organism
ppoi
Pollicipes pollicipes (gooseneck barnacle)
Brite
KEGG Orthology (KO) [BR:
ppoi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppoi03021
]
119089806
03036 Chromosome and associated proteins [BR:
ppoi03036
]
119089806
Transcription machinery [BR:
ppoi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
119089806
Chromosome and associated proteins [BR:
ppoi03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
119089806
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
SPT6_acidic
Tex_central_region
SH2
S1
Spt6_S1
Tex_YqgF
HHH_9
Tex_N
HHH_3
baeRF_family2
S1_RRP5
Motif
Other DBs
NCBI-GeneID:
119089806
NCBI-ProteinID:
XP_037068518
LinkDB
All DBs
Position
Unknown
AA seq
1744 aa
AA seq
DB search
MSAFIDSEASEGEDEEELTAREKKKLKKMKQHRLQDSSEEEEDDEEAMREEMKDLIDDNP
IDDEGDDESDSSSDGDGSGDGGRGGARKRSREDDDLDDALEDDDYDLIEENLGVKVKRKQ
LKRIRRISDSDDEKDRDESADEGRAPSESRDAGEHDERPPPIDGEPDDDEVEDEEDVDDF
LVDEDGKPLSKGPKKKKHIFKDAALQEAQDIFGVDFDFDEFDKYAGEEESEPDDEGIEED
DPDASKKRTRKKAAKKKSIYELYEPSELERGHFTDLDNEIRQTDIPERMQLRTVPVTPTE
LGSEDPELDAEAEWIFRHAFNDKPISAQSKDDDDEFRDKIRQSSSSVSKIKSALDFMRNK
HLEVPFIASYKKEYIVPELTSNALWRVYKWDEKWCQLQRRKQNMVRLLERMQAYQGDLVM
KDINAALPDGMRVLSSDDVDRVKLADSPEELQDIYMHFRMYYGQDVAAMHEHDMRKKMEE
KKAAPKKKRTETRIETNEEGEEVEVEVEVTDDEAEQKDDEDDREFLKYAVRTDAYGLCKR
NGLEPLSRRFGLTPEQFSENLRDTYQRHEVEQHPVEPEEMAQDYMTGNLATAQDVLKAAK
FMVASQISCEPLVRKCVREMFYSSARISVKPTKKGMKEIDESHYAFTMKYMKDKPVSSLR
DDQFLKLHMAEEEKLLVIDLGSKITNYAGQNYVDEAKGLYCRDEFSKTVQKWNELRGECV
ELALTQMMFPALRKELRTRLLQEAREFVLRQVRRRLFNWLSIAPYTASFPDEDEDEWDCS
DGVRVLAVAYETDPSTADYACMVGADGEVTDFLKLQHLMKRKDAWREADRLGKEADLDAI
RQLVEAKKPHVIVVGGESREAVTLAEELRALVQTLVAENQFPAIQVEILDNELAKVYANS
VKGVSDFRDYPELLRQAVSLARRLQDPLMEFAQLCNAEEECLCLRYHSLQEQLPRDQLLE
TVQIEFINRTNEVGVDVNLALANPYASPLVQFVCGLGVRKAATLLKTLKQTSQRLANRTE
LVTDCHLGPKILTNCAGFIKINANSLGDITDRYTDLLDGTRIHLETYEWARKMAVDALEY
DDEDGNPAGALEEIIDNPERLKDLDLDAFAEELERQGLGNRSITLYDIRAELNDRYKDLR
TPYMSPDPLELFNMLTKETPDTLYKGKLLLSTVTGFTRRKPKPEQMNQDNPVRDTDTGLW
QCPFCLKKDFPELSEVWSHFDTNACPGKAIGVRIRLDNGCSGFIQMKNLSDNRVTNPEDR
VHPGQTIFCRVVKIDIEKFWVECTCKSSDLADKNKEWRPAKDPFYDVDAENEDRQAAEAT
RKQKEAQTYLKRVIVHPAFHNIDFKEARRLLATMDQGEAIIRPSSQGSDQLTVSWKVTDD
VIQHINVKEMGKENAFSLGQTLVIDNEEFEDLDEILARHVSPVSAHARDLLSYKYYRDTD
GGKRPRAEELLRDEKRKNPQKIPYIVSVSKEHPGKFMLSYMPRTRARHEFITLTPEGFRF
RQQIFETIPALFRWFKDHFRDPVPQTPRGTTAAARTPFTPGAGFNINNVNAEAVARVAQN
LSGNVLHNLSQAAAHTPGYYPNTPYTPSGQTPFMTPYATTPRYQGGGGGTDAPRADGRST
PRMDARSTPRMDARSTPRADGRSTPRMDARSTPRMDARSTPRMDARSTPRMDARSTPRMD
ARSTPRADGRFTPRADGRSTPRGDGASTPRDGMRTPRDGFPPPGNPASRSRRTPRAGETP
LYDE
NT seq
5235 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcattcattgactctgaagcgtcggagggagaggatgaagaggagctgacagca
agggaaaagaagaaattaaagaaaatgaagcagcatcggctgcaagactcatcagaggag
gaggaagacgacgaggaggcgatgcgggaggagatgaaggacctgatcgacgacaacccg
attgacgacgagggagacgacgagagcgacagctcgtcggacggcgacggctctggtgac
ggcgggcgcggcggcgcgcgcaaacgctcgcgcgaggacgacgacttggacgacgcgctc
gaggatgacgactatgacctcattgaggagaacctgggggtcaaagtcaaacggaagcag
ctgaagcgcatccgtcgcatctccgactcggacgacgagaaggaccgggacgagtcggcg
gacgagggtcgcgcgccgtcagagagccgcgacgccggcgagcatgacgagcggccgccg
ccgatcgatggagagcccgacgacgacgaggtggaggacgaggaggacgtcgacgacttc
ctcgtggatgaggacggcaagccgctctccaagggacccaagaagaagaaacacatcttc
aaggacgctgcactgcaagaggcccaggacatcttcggcgtcgacttcgactttgacgag
ttcgacaagtacgccggcgaggaggagagcgagccggacgacgaaggcatcgaggaagac
gacccggacgcctccaagaagcgcaccaggaagaaggcggccaagaagaagtccatctat
gagctctacgagcccagcgagctggagcggggacacttcaccgacctggacaacgagatc
cggcagacggacataccggagcggatgcagctgcgcaccgtgcccgtcacgcccaccgag
ctcggctcggaggacccggagctcgacgccgaggccgagtggatcttccggcacgctttc
aacgacaagcccatcagcgctcagagcaaggatgacgacgacgagttccgggacaagatt
cgccagagcagttcgtcggtgagcaagatcaagtcggcgctggactttatgcggaacaag
cacctggaggtgccgttcatcgcgtcttacaagaaggagtacatcgtgcccgagctgacc
tccaacgccctgtggagggtgtacaagtgggacgagaagtggtgccaacttcagcgccgc
aagcagaacatggtgcgcttgctggagaggatgcaggcctaccagggtgacctggtgatg
aaggacatcaacgccgcgctgccggacggcatgcgcgtcctctcgagtgacgacgtcgac
agggtgaagttggctgattccccggaggagctgcaggacatctacatgcacttccgcatg
tactacggccaggacgtggctgctatgcacgagcatgatatgaggaagaagatggaggag
aagaaggctgcgcccaaaaagaagcgcactgaaacccgcatagaaacgaatgaagaaggc
gaagaagttgaagtagaagtagaggtgacggatgacgaggctgaacaaaaggacgatgag
gacgaccgcgaattcctgaaatacgccgtcagaacggacgcatatggactttgcaaaaga
aacggactggagccgctgtcccgccggttcggcctcacgccggagcagttctcggagaac
ctgcgcgacacttaccagcgccacgaggtggagcagcacccggtcgaacccgaggagatg
gcgcaggactacatgaccgggaatctggcgacggcccaggacgtgctgaaggccgccaag
ttcatggtggcgagtcagatatcgtgcgagcccctggtgcgcaagtgcgtgcgcgagatg
ttctacagctcggctcgaatcagcgtcaagcctactaagaagggcatgaaggagatcgac
gagagccactacgccttcaccatgaagtacatgaaagacaagccagtgagctcgctgagg
gacgaccagttcctgaagctgcacatggccgaggaggagaaactgctggtgatcgacctc
ggttccaagatcaccaactacgccggacagaactacgtcgacgaggccaagggcctctac
tgcagggacgagttcagcaagacggtgcagaagtggaacgagctgcgcggcgagtgcgtg
gagctggcgctgacgcagatgatgttcccggcgctgcgcaaggagctgcgcacgcgcctg
ctgcaggaggcccgcgagttcgtgctgcgccaggtgcggcggcgcctcttcaactggctc
tcgatcgcgccgtacacggcctccttcccggacgaggacgaggacgagtgggactgctcg
gacggcgtgcgtgtgctagccgtggcctacgagacggacccgtcgacggccgactacgcc
tgcatggtgggcgccgacggcgaggtcaccgacttcctcaagctgcagcacctgatgaag
cggaaggacgcgtggcgggaggccgaccgactcggcaaggaggccgacctcgacgccatc
cgccagctggtggaggccaagaagccgcacgtgatcgtggtgggcggcgagtcgcgcgag
gcggtcacgctggccgaggagctgcgcgccctggtgcagacgctggtcgccgagaaccag
ttcccggccattcaggtggagatcctcgacaacgagctggccaaggtgtatgccaacagt
gtcaagggcgtgagcgacttccgcgactatccggagctgctgcggcaggcggtgtcgctg
gcgcgtcgcctgcaggacccgctcatggagttcgcgcagctgtgtaatgccgaggaggag
tgtctctgcctgcgctatcactcgctgcaggagcagctgccgcgcgaccagctgctggag
accgtgcagatcgagttcatcaaccgcaccaacgaggtgggcgtcgacgtgaacctggcg
ctggccaacccgtacgcgtcgccgctggtgcagttcgtctgcggcctgggcgtgcgcaag
gcggccacgctgctcaagacgctgaagcagacgagccagcggctggccaaccgcaccgag
cttgtcaccgactgccacttggggcccaagatcctgacaaactgcgccggcttcatcaag
atcaacgccaactcgctgggcgacatcacagaccgctacacggacctgctggacggcact
cgtatccacctggaaacgtatgagtgggcgcgcaagatggccgtcgatgcgctcgagtac
gacgacgaggacggcaacccggccggcgcactcgaggagattatcgacaaccccgagcgg
ctcaaggacctggacctggacgccttcgccgaggagctggagcgccaggggctcggcaac
cgctccatcacgctctacgacatccgggccgagctgaacgaccgctacaaggacctgcgc
acgccgtacatgtcgcctgacccgctggagctcttcaatatgctgaccaaggagacgccc
gacacgctgtacaagggcaagctgttgctgagcaccgtcaccggcttcaccaggcgcaag
cccaagccggagcagatgaaccaggacaacccggtgcgcgacacggataccgggctctgg
cagtgcccgttctgcctgaagaaggacttccccgagctttccgaggtgtggtcacacttc
gacacgaacgcgtgtccgggcaaggcgatcggcgtacgcatcaggctggacaacggctgc
tcgggcttcattcagatgaagaacctgtccgacaaccgcgtcaccaaccccgaagaccgc
gtccatccgggccagaccatcttctgccgcgtggtcaagatcgacatcgagaagttctgg
gtcgagtgcacgtgcaagtcgtccgacctggccgataagaacaaggagtggaggccggcc
aaggatccgttctacgacgttgatgcggagaacgaagaccggcaggcggccgaggccacg
cgcaagcagaaggaggcgcagacctacctcaagcgggtgatcgtgcacccggccttccac
aacatcgacttcaaggaggcgcgccgcctgctggccaccatggaccagggcgaggccatc
atccggcccagtagccagggcagcgatcagctgaccgtgtcctggaaggtgaccgatgac
gtcatccagcacatcaacgtcaaagagatgggcaaggagaacgcgttcagcctgggccag
acgctggtcatcgacaacgaggagttcgaggacctggacgagatcctggcgcgccacgtc
agtcctgtgtcggcgcacgcgcgcgacctgctcagctacaagtactaccgcgacacagac
ggcggcaagcgaccgcgcgccgaggagctgctgcgagatgagaagcgcaaaaaccctcag
aagattccctatatcgtgtccgtctccaaggagcacccgggcaagttcatgctgtcctac
atgccgcgcacgcgcgcgcgccacgagttcatcacgctgacgccggagggcttccggttt
cggcagcagatcttcgagacgatcccggcgctgttccgctggttcaaggaccacttccgg
gacccggtgccgcagacgccgcgcggcacgacggccgctgcgcgcacgcccttcacgccc
ggcgctggcttcaatatcaacaacgtgaacgccgaggcggtggcgcgggtggcgcagaac
ctgtctggcaacgtgctgcacaacctgtcgcaggcagccgcccacacccccggctactac
cccaacacgccgtacacgccgtccggccagacgccattcatgacaccgtacgccacgacg
ccgcggtaccagggcggcggcggcggaaccgacgccccgcgcgccgacggccgcagcaca
ccgcgcatggacgccaggtcgacgccgcgcatggacgccagatcgacgccacgcgcagac
ggcaggtcgacgccacgtatggacgccaggtcgacgccacgcatggacgccaggtcgacg
ccgcgtatggacgccaggtcgacgccacggatggacgccaggtcgacgccgcgcatggac
gctaggtcgacgccgcgcgccgacggtcgcttcacgccgcgcgcggacggcaggtcgacc
ccgcgcggcgacggcgcctccacgcctcgcgacggcatgcgcacaccccgagacggcttc
ccaccaccgggtaacccggcgtcgcgctcgaggcggaccccgcgcgccggcgagacgccc
ctgtacgacgagtga
DBGET
integrated database retrieval system
