Pollicipes pollicipes (gooseneck barnacle): 119091368
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Entry
119091368 CDS
T08250
Name
(RefSeq) DNA mismatch repair protein Msh6-like isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
ppoi
Pollicipes pollicipes (gooseneck barnacle)
Pathway
ppoi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppoi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
119091368
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppoi03400
]
119091368
DNA repair and recombination proteins [BR:
ppoi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
119091368
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PRO8NT
Motif
Other DBs
NCBI-GeneID:
119091368
NCBI-ProteinID:
XP_037070018
LinkDB
All DBs
Position
Unknown
AA seq
1221 aa
AA seq
DB search
MDASISESYRLKAMSQKNTLFNYFQRSKASPTAAGSKQTEHKECTKSSTPISQKEHTQKN
TTPKVHKQCNQSVTPKRPRPTGTESGSHEAGRKGSAKQFKRLRLQSDDDDSENDQSLANG
KKVEDKQLPETIHSESDELDEDSEDEYQPKKHELSSDDEYADDAVDSAEDSPVKKTPKRA
KLVARTPTCGSSADKKSPRVPSTPSTPAPTTPRPLGSATKLKLASFSAECEASPAPADDL
ADNWPHLKLDFLLPERRRDAAGRRPSDPDFNPRSLRVPADFLDKQTPALRQWWVIKCEHF
DCVIFFKMGKFYEMFHMDAVLCVKELGLLYMKGDHAHVGFPEASYGRYAAALVEKGHKVC
RVEQTETPDMMQSRVASSTKRTTKFDKVVAREVCQITSRGTRTFSAMEGDATDGELRYLL
AVREQEVDGELQFGVCFVDTSVGHFRLGQFSDDCHCSRLRTLLAHYPPVQLLQARTAAPQ
RSRDVLTSLLPNCLKETLRVGEEFWAADKTLRFLAETDYFREGEDGSGELQWPQTLLDAT
RDGDTLHLNPRKDCELALQCLGAVTWYLQLSMLDTQLLSMRRFSRYQPPDVPGAAAEDGS
PETPPDRPESDGPAHHPAGRMVLDGVTLRNLEIVSNSVDGGTEGTLLGTLDTCVTAFGKR
VLRAWLCSPLRSPAAIAARLDAVEDLMSRADVMDDVTARLKQLPDLERLVRRIHVQGNSR
LRAGGSHPDSRAIMFEQTKYSRSRVMDLLSALAGFKQAAQLLQSLAGTASDFGSYLLRCC
LTLEKDGGKFPEYDEVLEYFETSFDQAEARKEGRILPSDGVDEQFDAARDALEQVERELD
EYLHEQCRHFGCKVVYFGQAKNRYQLEVPDRAVHKAGGSYELQTQKKGAKRYWTDTTKEL
LARQLAAEEQRTAALRDISRRMFARFSRHQAVWERAVQCLGLLDGLLALARFSRGAEVSC
RPELVTGADQAVLEITDGHHPWLGRGGGGADFIPNSVGTERGRLLLITGPNMGGKSTLMR
QAGLLVILAQLGCYVPAASLRLSPVDRVFTRLGAQDRIMSGESTFHVELSETAAILQHAT
AASLVLVDELGRGTSTFDGSAIASAVLRQLLRVGCRCLFSTHYHSLVEEFQDHDQVWLGH
MACMVENENQDDPTQETITFLYKLTDGACPKSYGFNAARLAGLPADLIRHAHQRARRFEQ
RVERMIRFTTVWRAAAAAAAQ
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
atggatgcatccatctcagagtcatacaggctgaaagcaatgtctcaaaagaatacactg
ttcaactatttccaacgttcaaaggcatcgcctactgcagctggcagtaaacagactgag
cacaaggagtgcactaaaagcagcactccaatatcacaaaaagagcacactcagaaaaac
actactcctaaagtgcacaagcagtgcaaccagagtgttaccccaaagcgaccgaggccc
actggaactgagagtggcagccatgaagcaggcaggaaggggagtgccaaacagttcaag
aggcttcgacttcagagtgatgatgatgacagtgagaatgatcagagcttggccaatgga
aagaaagtggaggacaagcagcttcccgaaaccatacattcagaatcagatgaactagat
gaagattctgaagatgagtaccaacctaagaaacacgagctgagctccgatgacgagtac
gctgatgacgccgtcgactcagccgaggactcgccggttaagaagacccctaaacgcgcc
aaactcgtcgcgagaactccaacgtgcggttcatctgccgacaagaagtctccccgagtc
ccctcgacgcccagcaccccggcaccgacgaccccgcgacccctgggcagtgcgaccaag
ctgaagcttgcctcgttctcggcggagtgcgaggcgtcgccggcgccggcggacgacctg
gcggacaactggccgcacctgaagctggacttcctgctgccggagcggcggagggacgcg
gccggccgccgccccagcgaccccgacttcaacccgcgctcgctgcgcgtgccggcagat
ttcctggataagcagacgccggctttacggcagtggtgggtcatcaagtgtgagcacttc
gattgcgtcatcttcttcaaaatggggaagttctacgagatgtttcatatggatgccgtt
ctctgcgtcaaggagttggggcttctttatatgaagggggaccacgcgcacgtgggcttc
cccgaggcgtcctacggccggtacgcggccgccctggtggagaagggccacaaagtgtgc
cgcgtggagcagacggagacgccggacatgatgcagagccgcgtcgccagcagcaccaag
aggacgaccaagtttgacaaggtggtggcgcgtgaggtgtgtcagatcacgtcccgaggg
acgcgcaccttcagcgccatggagggcgacgccaccgacggcgagctgcgctacctcctg
gctgtcagggaacaggaggtagacggcgagctgcagttcggcgtgtgcttcgtggacacg
tcggtcggtcacttccgtctggggcagttcagtgacgactgtcactgctcacgcctgcgc
acgctgctggcgcactacccgccagtgcagctgctgcaggcgcgcaccgccgcgccgcag
cggtcacgtgacgttctgacgtcactgctgcccaactgcctgaaagagacgctccgagtc
ggcgaggagttctgggcggccgacaagacgctgcgcttcctggcggaaacggactacttc
cgggagggcgaggacggcagcggcgagctccagtggccgcagacgctgctggacgccacc
agagacggagacaccctgcacctgaacccccggaaggactgtgagctggcgctgcagtgt
ctgggcgccgtcacctggtacctgcagctcagcatgctggacacgcagctgctctccatg
cgcaggttctcccggtaccagccgccggacgtgccgggcgcggcggctgaggacggctcg
ccggagacgccgccggaccggcctgagtcggacggccccgcgcaccatccggcgggcagg
atggtgctcgacggcgtcacactccggaatctggagatcgtctccaattcggtagatggc
ggcactgagggtacgctgctgggcacactggatacctgcgttacggccttcggaaaacgc
gtgctgcgggcctggctctgcagcccactgcgctcgccggccgccatcgccgcccgtcta
gacgccgtcgaggacctcatgagccgcgctgacgtcatggatgacgtcacggcgcggctg
aagcagctgcccgacctggagcggctggtccggcggatccacgtgcagggcaacagccgg
ctgcgggccggcggcagccacccagactcacgcgccatcatgttcgagcaaaccaagtac
agccgcagccgcgtcatggacctgctgtcggcgctggccggcttcaagcaggccgcccag
ctgctgcagtcgctggcaggcaccgcgagcgacttcggcagctacctgctccgctgctgc
ctgacgctggagaaggatggcggcaagtttcccgagtatgacgaagtgctcgagtacttt
gagacctcgtttgaccaggccgaggcgcgcaaggagggccgcatcctgccctcggacggc
gtggacgagcagttcgacgcggcccgcgacgcgctcgagcaagtggagcgcgagctggac
gagtacctgcacgagcagtgccgccacttcggctgcaaggtggtgtacttcggtcaggcc
aagaaccggtaccagctggaggtgccggaccgagcggtccacaaggcgggcggctcgtac
gagctgcagacgcagaagaagggcgccaaacgctactggaccgacaccaccaaggagctg
ctggcccggcagctggcggctgaggagcagcggacggcggcgctgcgggacatcagccgg
cgcatgttcgccaggttcagccgccaccaggctgtctgggagcgcgccgtccagtgtctg
ggcctgctggacggcctgctggcgctggccaggttcagtcggggcgctgaagtcagctgt
cgaccggagctggtcaccggcgccgaccaggcggtgctggagatcacggacggccaccac
ccgtggctgggccgcggcggcggcggcgccgacttcatccccaactcggtcggcacggag
cgcggccggctgctgctcatcacgggccccaacatgggcggcaagtcgacgctgatgcgc
caggccggcctgctcgttatcctggcgcagctgggctgctacgtgccggcggcgtcactg
cgcctgtcgccggtggaccgcgtgtttacgcggctcggcgcccaggaccgcatcatgagc
ggggagtccaccttccacgtggagctgagcgagacggccgccatcctgcagcacgccacc
gccgcctcgctcgtgctggtggacgagctcggccgcggcacctccacattcgacggctcg
gccatcgcctccgccgtgcttcgccagctgctgcgcgtcggctgtcgctgcctcttctcc
acccactaccacagcctggtggaggagttccaggaccacgaccaggtgtggctgggccac
atggcctgcatggtggagaacgagaaccaggacgaccccacccaggagaccatcacgttc
ctgtacaagctgacggacggcgcgtgccccaagtcgtacggcttcaacgccgcgcgcctg
gctggcctgcccgccgacctgatccggcacgcgcaccagcgggcgcgccgcttcgagcag
cgcgtagagcgcatgatccgcttcactaccgtgtggcgcgccgccgccgccgccgccgca
cagtag
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