Pollicipes pollicipes (gooseneck barnacle): 119092507
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Entry
119092507 CDS
T08250
Name
(RefSeq) uncharacterized protein LOC119092507
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ppoi
Pollicipes pollicipes (gooseneck barnacle)
Pathway
ppoi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppoi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119092507
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppoi03021
]
119092507
03019 Messenger RNA biogenesis [BR:
ppoi03019
]
119092507
Transcription machinery [BR:
ppoi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
119092507
Messenger RNA biogenesis [BR:
ppoi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
119092507
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
Pcf11_C
Pfc11_Clp1_ID
zf_PCFS4
Pcf11_helical
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
119092507
NCBI-ProteinID:
XP_037071362
LinkDB
All DBs
Position
Unknown
AA seq
1767 aa
AA seq
DB search
MGEEIEKEYLSSLKDLTFNCKPLINMLTLLAEENSVNAPVIVQTIEKHLSRTDYKLPCLY
LMDSILKNVGKEYLQLFTQNIVSTFAAVFEKVDEKVRASMFRLRQTWSGVFPAKKLYAID
LRVHSIDPAWPVMSSATANKNTIHINPKLFKKGSAAAASSLPASSTAPAPAAAPAVSPAS
MDLITEKQMELLNLQIQKVELELQCAGSRQEQMHKQKELLELRTQKAQLELQQATSKLKN
KGGMMAASTTLGVTQAQVTASPVSTVATSSTASPQLVAAQAEARAALEAAAAGAAQAEPS
ARAAGDRGRAHSSARHKSKTKMTIRPAQVMTSAAPSDPRSAVARADPRQGVSRDPRLQAR
SRDKAKDKDKGKTSKHESKSKSSSSPSSKNKDSASKQSKKSLEIGREKRSSPKSKSDSPK
SKQAESPCQKPSESPKRKRTDSPKHRTTDSPKRSAPDSPRLKPGQSPKRRHVEEPARPRD
SPAIAEAQKLVPEEEDEDEDEPASAMSPAHSSPVEDETSPAVFRRAKNSRSRRYKQHSSW
SPSPERRTSDSSDMEKENVNDVDLRQLSGQTVPAADSQPAADSKKSGFHDLFGSEDTDLR
FVEPASGGTGGWRQLKEARPDTFKSPLRARAAQHTPVRRGPTAEAAVVTCPAHRGSGFGS
LRTLEESTEATQKNIKMILHQAEEQLRSENISWEQYNNILQQVIQLGERQKIQERRTLER
RQSIHHQTACRQARVHQRSPVAAVVVGFGAPPEQYRDQDHRPHPSVFGPFAGARGGGRLP
PTGMRGRPGPPFEEERTLPYRGRGRGRGRPQPHHPAHGRFEEFEFTNEPDLPEASADDLA
QVERDKADTTSTFINEEPKEIRWYGENCICLLGWDDPRMLFFKPGSRQVSVDGQRVLCRF
NDKYSEVLVDGVPHRVRLGGPTKEVFIDGHGHQVFFGGEPVQVSLDGRQRALSVDGPAPG
VAIGRRRTDLLAGKIKLIIDGSETVPIYLDCKPQRFDVAGKPHVLRFRDGFERMELNGHV
MRTEFGGLPLPVVVAGRKHYIRLTRVPVRVKPGRMTMKGMHPHVAGWPLPWEDRELQQPA
GGRPAPPRDDDDGSQDEPFGRGRPAPGPGPGPRAAAAAAGGRPGRQPAWDEQNDSDSRGA
SSNLDVLTNMLPTTVSKPSGPSYHAENPGVALAPGAIGMDLNVLLSKLEQTGLIKFPSAG
KGRNKNNKKEEEIKNIKEINWKAESLKIRQPGLINLLYSGIQCSSCGSRFLPEQTVQYSN
HLDWHFRQNRREKEGTRRAQSRRWYYDLASWMAYEEVEDADDRADPAFEQPEALEATEEA
EDLESMCSAPVGPTEADNKCQVCGETLRQFYHEESEEWHLRDCIRVEGKAYHPGCFEDHK
TTLLLQSMSRDSTDDASVDTAAADGSLAAGDEPADDAERKPSADELKAEPGANINADVGD
AEAGVKAAGAEKPAEVRTELDADVTMHDVDAKKEEAEGNAARDADLRDENAGVEMEDPDV
KTDDANVKTEDTEVKKEDTDVKPEDVATANTPLDNEENSNVKRDDAAAKAEEVAANSGGA
VTEADSLAGSAAPASAEVSGIDAEQAGASVPDKEEAPGDGDGDGDGDGDATAAPEDRSVA
AVPLVAVKQEPEDAEEAAPEPQLEPESGPQLEPEPEPQLEPEPDVDVKREPASLGRDLVS
AGSVAKLVNRRGGFGGGGGVRSRARPPLAGRIRLNLAGVAPEPEPEGPVFAERPQPAAVK
PALIGRQLTEVPTKHRGDEESGMCVVM
NT seq
5304 nt
NT seq
+upstream
nt +downstream
nt
atgggagaggaaatagagaaagaatatctctcttctttaaaagaccttacctttaactgc
aaaccactcatcaatatgttgacactccttgctgaagaaaattcggtgaatgcaccggtg
atcgtgcagaccatagaaaaacacttgtcgaggacggactacaagctgccatgtctgtac
ctgatggactccatcctgaagaatgttggcaaggagtacctgcagctgttcacccagaac
atagtgtcgacattcgccgcggtgttcgagaaggtcgacgagaaggtgcgggcgtcgatg
ttccgtctgcgacagacttggtcaggcgtgttcccagctaaaaagctgtacgcgattgac
ctgcgggtccacagcattgacccggcctggccggtgatgagctccgccactgccaacaag
aacacaatccacatcaatccgaagctcttcaaaaagggctcggcggctgctgcctctagt
cttcccgcctcgtctacggcgcctgcgccggccgcggcgccggcggtcagccccgcctcc
atggacctcatcaccgagaagcagatggagctgctcaacttgcagatccagaaggtggaa
ctggagctgcagtgcgccggctcccgtcaggagcagatgcacaagcagaaggagctgcta
gagctccgcacgcagaaggcccagctggaactgcagcaggccaccagcaagctgaagaac
aagggtggaatgatggcggcgtcgaccacgttgggcgtaacgcaggctcaggtcacagca
agtccggtgtctacagtcgccaccagtagcacagcatcgcctcagcttgtggcggcgcag
gccgaggcgcgggcggcgctggaggcggcggcagccggcgcggcgcaggccgagccgtcg
gcgcgcgccgccggcgaccgcggacgtgcccactcgtccgcacgccacaagtctaagacg
aagatgaccatccgaccggcgcaagtgatgacgtcagcagcgccttcagacccgcgctcg
gcggtggcgcgcgcggacccgcgccagggcgtcagccgcgacccgcgtctgcaggccagg
agcagggacaaggccaaagacaaggacaagggcaagacgtccaagcacgagtccaagtcc
aagtcgtcaagctcccccagctcgaagaacaaggattcggcatcgaaacaatcaaagaag
tcgcttgagatagggagggagaaacgcagctcgcctaagagcaagtcagactctcccaaa
tccaagcaggcggagtcaccctgccagaagccatctgagtccccgaagcgcaagcgaacc
gactcgcccaagcacaggacgactgactcgcccaagcggtcggcgcccgactcgccgcgg
ctcaagccgggtcagtcgcccaaacggcggcacgtggaggagccggcgcgcccgcgcgac
agtcccgccatcgctgaagctcaaaagctagtgccggaggaggaggacgaggacgaggac
gagccggcgtcggcaatgtcgccggcccacagctcgccggtcgaggacgagaccagcccg
gccgtgttccgacgagctaagaactcgcgctcgcgccggtacaagcagcatagctcgtgg
agcccgagcccggagcggcggacctccgactccagcgacatggagaaggagaacgtcaac
gatgtggacctgcggcagctctcgggccagacggtgccggccgccgacagccagcccgcc
gccgacagcaagaagtcgggcttccacgatctgttcggctcagaggacactgacctgcgc
ttcgtcgagcccgcctcgggcggcacgggcggctggcgccaactgaaggaggcgcggccc
gacacgttcaagtcgccgctgcgtgcgcgcgccgcgcagcacacgcccgtccggcgcggg
ccgaccgccgaggctgccgtcgtcacttgtcccgcgcaccgcggcagcgggttcggctcg
ctgcgcacgctcgaggagtcgaccgaggccacgcagaagaacattaagatgatcctgcac
caggccgaggagcagctgcgctcggagaacatctcctgggaacagtacaacaacatcctg
cagcaggtgatccagctgggcgagcggcagaagatccaggagcggcgcacgctggagcgg
cgccagagcattcaccaccagacagcttgccgacaggcgcgcgtgcaccagaggagcccg
gtggcggcggtggtggtaggcttcggcgcgccgcccgagcagtaccgcgaccaggatcac
cggccacaccccagtgtgttcggcccgttcgcgggggctcggggcggcgggcggctgccg
ccgactgggatgcgcggccggcccgggccaccgttcgaggaggagcgcacactgccgtac
cgcggccgcggccggggcagaggccggccgcagccgcaccacccggcccacggccgcttc
gaggagttcgagttcaccaacgagccggacctgccggaggcgagcgccgacgacctggct
caggtggagcgcgacaaggccgacactacgtccaccttcatcaatgaggagcccaaggag
atccgctggtacggcgaaaactgcatctgcctgctgggctgggacgacccgcgcatgctc
ttcttcaagccgggatcgcgccaagtcagtgtcgacggccagcgcgtgctctgccgcttc
aacgacaagtactcggaggtgctggtggacggcgtaccgcaccgcgtccggctgggcggc
cccacgaaggaggtgttcatcgacggccacggccaccaggtgttcttcggcggcgagccg
gtccaggtgagcctggacggccggcagcgggcgttgagcgtcgacgggccggcgccgggc
gtggccatcggccgccggcgcaccgacctgctcgccggcaagatcaagctgatcatcgac
ggcagcgagacggtgcccatctacctcgactgcaagccgcagcgcttcgacgtggctggc
aagccgcatgtgctgcgctttcgcgacggcttcgagcgcatggaactgaacggtcacgtg
atgcgcaccgagttcggcggcttgccgctgccggtggtggtggccggccgcaagcactac
atccgcctgacgcgcgtgccggtgcgcgtgaagccgggccggatgaccatgaagggcatg
cacccgcacgtggccggctggccgctgccctgggaggaccgcgagctgcagcagccggcc
ggcggccggccggcaccgccgcgcgacgacgacgacggctcgcaggacgagccgttcggc
cgcggccggccggcgccggggccggggccgggaccgcgcgccgccgccgccgccgccggc
ggccggcccggccgtcagcccgcctgggacgagcagaacgacagcgactcgcgcggcgca
tcttccaatttggacgtcctcaccaacatgctgccaacgacggtcagcaagccatcaggc
ccgtcataccacgctgaaaatccaggagtggcgctggctcctggtgcgatcggcatggac
ctcaatgttctgctcagcaagctggagcagaccggcctcatcaagttccccagcgctggc
aagggccgcaacaagaacaataaaaaggaggaggagattaagaacatcaaggagatcaac
tggaaggccgaaagcctgaaaatccgacagccgggcctcatcaacctgctgtactcgggc
atccagtgctcgtcgtgcggctcgcgctttctgccagaacagacggtgcagtactcgaac
cacctggactggcacttccgccagaaccggcgcgagaaggagggcacgcgccgcgcccag
agccgccgctggtactacgacctggccagctggatggcctatgaggaggtggaggacgcc
gacgacagggcggaccctgcgttcgagcagccggaggcgttggaggcgacggaggaggcc
gaggatctggagtcgatgtgctcggcgcccgtggggcccaccgaggctgacaacaagtgc
caggtgtgcggcgagacgctgcgccagttctaccacgaggagtcggaggagtggcatctg
cgcgactgcatccgcgtcgagggcaaggcctaccacccgggatgcttcgaggaccacaag
accacgctgctgctgcagtcgatgagccgcgacagcacggacgacgcctccgtggacacg
gcggcggccgacggcagcctcgccgccggcgacgaacccgccgacgacgccgagcgcaag
ccttctgctgatgagctcaaggcggagccgggcgccaacattaacgccgacgtcggcgac
gccgaggcgggggtgaaggccgcaggcgcggaaaagcccgccgaagtcaggacggagctg
gatgctgacgtaactatgcatgatgtggacgcgaagaaagaggaagctgaaggtaatgct
gcccgggacgctgacctcagggacgagaacgccggcgtggagatggaagaccccgacgta
aagacagatgacgccaacgtcaagacagaggacactgaagtcaagaaagaagacactgac
gtcaagccggaggacgtggcgacagcaaatactccccttgacaacgaggagaattccaac
gtcaaacgggacgatgcggctgcgaaggcagaagaggtcgctgcgaattcgggcggcgcc
gtcacggaagcggacagcttggcgggctctgccgcgccagcgtcggccgaggtcagcggg
atcgacgcggaacaggccggtgccagtgtcccggacaaggaggaggcgcccggcgacggc
gacggcgacggcgacggcgacggcgacgccaccgctgcgccggaggaccggagcgtcgct
gccgtaccgctggtggccgtgaagcaggagccggaggacgcggaggaggcggcgccggag
ccgcagttggagccggagtcggggccgcagttggagccggagccggagccgcagctggag
ccggagccggacgtggacgtcaagcgggagccggcgtcacttggtcgtgacctcgtctca
gccggctcggtagccaagctggtgaaccgtcgtggtgggttcggcggcgggggtggtgtc
cggagcagggcgcggccgccgctggccggccgcatccggctgaatctggcgggcgtggcg
cctgagcccgagccggaggggcccgtgttcgcggagcggccgcagccggcggccgtcaag
ccggcgctgataggtcgccagctgaccgaggtgcccaccaaacacaggggcgacgaggag
tcgggcatgtgcgtagtcatgtga
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