Pollicipes pollicipes (gooseneck barnacle): 119096572
Help
Entry
119096572 CDS
T08250
Name
(RefSeq) exosome component 10-like
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
ppoi
Pollicipes pollicipes (gooseneck barnacle)
Pathway
ppoi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppoi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119096572
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppoi03019
]
119096572
Messenger RNA biogenesis [BR:
ppoi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
119096572
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
119096572
NCBI-ProteinID:
XP_037075371
LinkDB
All DBs
Position
Unknown
AA seq
649 aa
AA seq
DB search
MLIEYGVLSKYKIQGALSSRDLDEKFDLIVEANDQLLEKINGDLDEAAGMKKRLDPVVQT
VSASTDGPISGRWNVTTNRTVARSPSQTIRLMTANNIERPQLSFKQRVDNTTAAFVPIIT
DKPHALRPLAVLLETDDQGLESFSHPYEFELERFQPPEWALRPASEPTPPSPADQAPVTM
VTSPAGLEQLVKELSRESEVAVDLEHHSYRSYLGLTCLIQISTRTRDYIVDALQLRGQLQ
PLNEVFANPNIVKVFHGADSDVEWLQRDCGLYLVHLFDTHQACKVLAFPRLSLAYLLQHF
CNVTADKRFQLADWRIRPLPENMVRYAQEDTHYLLYIYDRMRNLLLEKGNEQKNLIRSVY
TNSTLVCLKKYQKPVVRADSHVEMYRRSKKSFSNKQMAALAQLYKWRDETARIEDESTQY
VLPNHMLLQISELLPREMQGLLACCSPVPPLLRQNLAAVHKMVLTARSLQHVIETRADPA
ILVEAPARSRDECNSVLHNRHDTSHLADGDRVNVPMLLCPGADDSLDTSAAEEVPTPSAR
IKEAPDLDVFAPERAVTSSVGEDWISPYRRYLMMKESIGDEKVVRRMAELTEMTLLSGVK
RKDTIREAKKGRKAHKRKRDADGAERYGLTCVHDVSKQRQRLKSFYEQY
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgcttattgagtatggggtcttgagcaagtacaagattcaaggggccctctccagtcgt
gacctggatgagaagtttgacctgatcgtggaagccaatgaccagctgctggaaaaaatt
aacggtgacctggacgaggcggccggcatgaagaaacggctggatccggtggtgcagacg
gtcagcgccagcaccgacggtccgattagcggccgctggaacgtcaccactaaccggacg
gtggcgcggtcgccctcgcaaacaatccgcctcatgacggcgaacaacatcgagcggccg
cagctgagcttcaagcagcgcgtcgacaacacgaccgcggcgttcgtgccgatcatcacg
gataagccacatgcgctgcggccgctggccgtgctgctcgagacggacgaccagggcttg
gagagcttctcgcacccgtacgagttcgagctggagcgtttccagccgccggagtgggcg
ctgcgccccgcctctgagccgacgccgccgtcgccggccgaccaggcgcccgtcaccatg
gtgacgagtccggccggcctcgagcagctggtgaaggagctcagcagggagagcgaggtc
gccgtcgacctggagcaccacagctaccgcagctacctgggcctgacgtgcctcatccag
atttcgacgcgcacgcgcgactacatcgtggacgcgctccagctccgaggacagctgcag
ccgctcaacgaggtgttcgccaatcccaacatcgtcaaggtgttccacggcgccgactcg
gacgtggagtggctgcagcgcgactgcggtctgtacctggtgcacctgttcgacacgcac
caggcctgcaaggtgctggccttcccgcgcctctcgctcgcctacctgctgcagcacttc
tgcaacgtgaccgccgacaagcggttccagctggccgactggcggatcaggccgctgccc
gagaacatggtgcgctacgctcaggaggacacgcactacctgctgtacatctacgaccgc
atgcgcaacctcctgctggagaagggcaacgagcagaagaacctcattcggagcgtgtac
accaacagcacgctcgtctgtctgaagaagtaccagaagccggtggtgcgagccgacagc
cacgtggagatgtaccggcgaagcaaaaagtcgttcagcaataaacagatggcagcactg
gcgcagctctacaagtggcgcgacgagactgcccgcatcgaggacgagagcacgcagtac
gtgctgccgaaccacatgctgctgcagatctctgagctgctgccgcgcgagatgcagggt
ctgctggcctgctgcagccccgtgccgccgctgctgcgccagaacctggccgccgtgcat
aagatggtgctgaccgcgcgcagtctgcagcatgtcatcgagacgcgggcggacccggcc
atcctggtggaggcgccggcccggtcacgtgacgagtgcaacagcgtgctgcacaaccgg
cacgacaccagccacctggcggacggcgaccgagtcaacgtccccatgctgctgtgtccg
ggggctgacgacagcctggacacgtcggcggcggaggaggtcccgacgccgtcagccagg
atcaaggaggcgccggatctggacgtgttcgcgccggagcgggcggtgacgtcatccgtg
ggagaggattggatcagcccctaccgccgctacctgatgatgaaggagagcattggtgac
gagaaggtggtgcgtcggatggccgagctgaccgagatgacgcttctgtcgggcgtcaaa
cggaaggacaccattcgggaggcgaagaagggccgcaaggcgcacaagcggaagcgggac
gcggacggcgcggagcgatatggcctcacttgcgtgcacgatgtcagcaaacaacggcag
cgactaaaatccttctacgagcagtactag
DBGET
integrated database retrieval system
