Pollicipes pollicipes (gooseneck barnacle): 119096821
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Entry
119096821 CDS
T08250
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB-like
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
ppoi
Pollicipes pollicipes (gooseneck barnacle)
Pathway
ppoi03022
Basal transcription factors
ppoi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppoi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
119096821
09124 Replication and repair
03420 Nucleotide excision repair
119096821
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppoi03021
]
119096821
03400 DNA repair and recombination proteins [BR:
ppoi03400
]
119096821
Enzymes [BR:
ppoi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
119096821
Transcription machinery [BR:
ppoi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
119096821
DNA repair and recombination proteins [BR:
ppoi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
119096821
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_34
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
119096821
NCBI-ProteinID:
XP_037075678
LinkDB
All DBs
Position
Unknown
AA seq
785 aa
AA seq
DB search
MGGGKKGKYEKDFRGKRKYDPPSNDNSEDGFDPEQDGVPDAAKHDAEKEVQAAEDEFGAK
DYRSQMLLKPDHVSRPLWVAPDGHIFLESFSPVYRHAHDFLIAIAEPVCRPEHIHEYKLT
AYSLYAAVSVGLQTDDIIEYLKRLSKTSIPDGIIEFIRLCTVSYGKAKLVLKHNRYFIES
QHPEVIQKLLKDAVISDCRLRQSAEDTEALITEKQQKTDKVQFGSKAEPAGGEPAAAAGE
KEAAEAVPDDITNFYGRLDDDEDEDATETQTVSFEVQQDRIEVIQKRCIELEYPLLAEYD
FRNDSVNRDINIDLKPVAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTACCT
VRKRALVLCNSGVSVEQWKAQFKMWSTADDSMICRFTSDAKDKPMGCSILITTFNMITHT
QKRSWEADQTMNWLKEQEWGIMVLDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDK
IADLNFLIGPKLYEANWLELQKNGYIARVQCAEVWCPMAPEFYREYLACRSTKRLLLYAM
NPNKFRACQFLIRYHEKRSDKIIVFSDNVFALKHYAIKMNKPYIYGPTSQSERIQILQNF
KFNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYN
AFFYTLVSQDTVEMSFSRKRQRFLVNQGYSYKVITRLAGMDEDRDLLYNSKDEQGQLLQQ
VLAASDLDADEERVPGEQGRPGGGGGGGFQRRAGNMASMSGADDAVYMEYRRNIKHPLFK
KFRVK
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgggtggtggaaagaaagggaaatatgaaaaagatttccgtggcaagaggaagtatgat
ccaccatcaaatgataattcagaggatggatttgatccagagcaagatggagtcccagat
gctgccaagcatgatgcagagaaggaagttcaggcagctgaggatgagtttggtgccaag
gattacagatctcagatgctgttgaaacctgatcatgtctctcggccactgtgggtggcg
ccggatggacacatcttcctcgagtcgttctcgcccgtgtaccggcacgcgcacgacttc
ctgatcgccatcgccgagcccgtctgccggcccgagcacatccacgagtacaagctgacg
gcgtactcgctgtacgcggccgtcagcgtgggcttgcagacggacgacatcatcgagtac
ctgaagcggctcagcaagacatccattccggacggcatcatcgagttcatccggctctgc
accgtctcctacggcaaggcaaaactcgtgctgaagcacaaccgctacttcatcgagtcg
cagcacccggaggtgatccagaagctgttgaaggacgccgtcatctccgactgccggcta
cgccagtcggctgaggacacggaggcgctcatcaccgagaagcagcagaagaccgacaaa
gtgcagttcggcagcaaggcggagccggccggcggcgagccggcggcggcggccggcgag
aaggaggcggccgaggccgtgccggacgacatcaccaacttctacggccgactggacgac
gacgaggacgaggacgccaccgagacgcagacggtctcgttcgaggtccagcaggacagg
atcgaggtgatacagaaacgctgcatcgagctggagtacccgctgctggccgagtacgac
ttccgcaacgactccgtcaaccgcgacatcaacatcgacctcaagccggtggccgtgctg
cgcccctaccaggagaagtcgctgaggaagatgttcggcaatggcagagcccgctccggc
gtcatcgtcctgccctgcggtgctggcaagagtctggtgggcgtgaccgcttgctgcacg
gtccgcaagcgcgcgctggtcctctgcaactcgggcgtctccgtggaacagtggaaagcc
cagttcaagatgtggtccacagcggacgacagcatgatctgccgcttcacttcggacgcc
aaggacaagccgatgggctgcagcatcctcatcaccaccttcaacatgatcacacacacg
cagaagcgctcctgggaggccgaccagacgatgaactggctgaaggagcaggagtggggc
atcatggtgctggacgaggtgcacaccattccggccaagatgttccggcgcgtgctcacc
atagtgcaggcccactgcaagctcggtctgacggccacgctggtgcgcgaggacgacaag
atcgccgacctcaacttcctcatcggtcccaagctgtacgaggccaactggctggagctg
cagaaaaacggctacatcgcgcgcgtgcagtgcgccgaggtgtggtgtccgatggcgcct
gagttctaccgcgagtacctcgcctgcaggagcaccaaacggctgcttctgtacgcgatg
aacccgaacaagtttcgggcatgccagtttctgatccgctaccacgagaagcgctccgac
aagatcatcgtcttctccgacaacgtgttcgctctcaagcactacgccatcaagatgaac
aagccttacatctacggtcccacgtcacagagcgagcgcatccagatcctgcagaacttc
aagttcaaccccaaggtgaacaccatcttcgtgagcaaggtggccgatacgtcgttcgac
ctgccggaggcgaacgtgctgatccagatctcgtcgcacggcggctcgcggcgtcaggag
gcgcagcgactgggccgcatcttgcgtgctaagaaaggagccatcgccgaggagtacaac
gccttcttctacacgctcgtatcgcaggacacggtggagatgagcttctccaggaagcga
cagcgcttcctggtcaaccagggctacagctacaaggtcatcacccggctggccggaatg
gacgaggaccgtgacctgttgtacaacagcaaggacgagcagggtcagctgctgcagcag
gtgctggccgccagcgacctggacgccgacgaggagcgtgtgcccggcgagcagggtcgg
cccggcggcggtggtggcggcggcttccagcggcgcgccggcaacatggcctccatgtca
ggcgccgacgacgccgtgtacatggagtaccgccgcaatatcaagcatccgctgttcaag
aagttccgggtcaagtga
DBGET
integrated database retrieval system
