Pollicipes pollicipes (gooseneck barnacle): 119097008
Help
Entry
119097008 CDS
T08250
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ppoi
Pollicipes pollicipes (gooseneck barnacle)
Pathway
ppoi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppoi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119097008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppoi03019
]
119097008
03041 Spliceosome [BR:
ppoi03041
]
119097008
03009 Ribosome biogenesis [BR:
ppoi03009
]
119097008
03016 Transfer RNA biogenesis [BR:
ppoi03016
]
119097008
Enzymes [BR:
ppoi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119097008
Messenger RNA biogenesis [BR:
ppoi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
119097008
Spliceosome [BR:
ppoi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
119097008
Complex C
U4/U6.U5 tri-SnRNP related factors
119097008
Ribosome biogenesis [BR:
ppoi03009
]
Eukaryotic type
Pre-60S particles
Helicases
119097008
Transfer RNA biogenesis [BR:
ppoi03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
119097008
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
ATPase_2
TPR_TTI1_C
Motif
Other DBs
NCBI-GeneID:
119097008
NCBI-ProteinID:
XP_037075911
LinkDB
All DBs
Position
Unknown
AA seq
1030 aa
AA seq
DB search
MDDDLFSVFEDKSSVTPDNANKNGNAKQKTSKEVEPSVDDLLQQLTSGKRNAEEASGDEA
DDAKKFKVEEEAVDDAKLAEQMPRIQVHTIDTMESCVHEVCVPPDQEYVPLTAPTRSPPK
EYPFVLDPFQKEAVLCLESNQSVLVSAHTSAGKTVVAEYAIALSLRDKQRVIYTTPIKAL
SNQKYREFNEEFQDVGLMTGDVTINPTASCLIMTTEILRSMLYRGSEVMREVAWVVFDEI
HYMRDKSRGYVWEETIILLPDSVHYVFLSATIPNARQFAEWITYLHKQPCHVVYTDFRPT
PLQHYIYPSGGDGIHLVVDEQGTFREDNFSAAMAGLANPSDAARKTRGPGNKAGSKEGTN
VYKIIKMVMERNLAPVIVFSFSKKECEAYALQMAKLDFNTGDEKRLVEEVFNNAMDVLSE
EDRQLPQVEHVLPLLRRGIGIHHGGLLPILKETIEILFGEGLIKALFATETFAMGLNMPA
RTVLFTGCRKFDGKDFRWLSSGEYIQMSGRAGRRGKDDKGIVILMVDESMSPAVGKNLVK
GMADPLNSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQNYAAIPGLCDRVNKARTSHD
ALSIAREAEVASYYKLRMQLAALKKDYQKYITLPKYIVPFLNPGRVVHVQTDDKDFDWCI
VINYKREEAKKTDNPLESSATYVVDVLMHVSKETAQLKETALLEPPPTDQKGEMVVVPVL
VHLIDEISAVRLKYPQDLRPLDNRMIVLKTIKEMKRRFPAGVPRLDAVKDMGIRDREFVS
LVEKIESFERRLFSHPLHDDPHLDELYNQYVEKVELNNELKAAKLELRRAKSLLQMDELK
CRKRVLRRLGYCTAAGVIEVKGRVACELSSADELLITEMIFNGMFNELTVPQSVALMSCF
TFDEKSNDAPKLQDQLSGALRQMQELARRIARVSVEAKLELDEEQYVGQFKPAMMDVVNA
WCQGSSFGELCKMTDAFEGSIIRCMRRLEELLRQMVQAAKGIGNTDLENKFSEGIRLLKR
DIVFAASLYL
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atggatgatgaccttttctcagtgtttgaagataaatcatctgtaacaccagataatgca
aacaagaatgggaatgctaagcaaaaaacttcaaaagaagtggagccatcagtggatgac
ctgctgcagcagctgacatctggtaagagaaatgctgaggaggccagtggtgatgaagct
gatgatgccaagaaattcaaggtggaggaagaggcagtagatgatgctaagctggccgag
cagatgccgcggatccaggtgcacaccatcgacacgatggagtcgtgcgtgcacgaggta
tgcgtgccgcccgaccaggagtacgtgccgctgacggcgcccacccggtcgccgcccaag
gagtacccgtttgtgctggacccgttccagaaggaggccgtgctctgcctggagagtaac
cagtcggtactggtgtcggcccacacctccgccggaaagacggtcgtcgccgagtacgcc
attgccttgtctctgcgcgacaagcagcgggtcatctacacgacccccatcaaggcgctg
agcaaccagaagtaccgcgagttcaacgaggagttccaggacgtgggcctgatgacgggc
gacgtcaccatcaacccgaccgcctcgtgcctcatcatgaccacagagatcctgcgcagc
atgctgtaccgaggctcggaggtgatgcgcgaggtggcctgggtcgtgttcgacgagatc
cactacatgcgggacaagtcgcgtggctacgtctgggaggagaccatcatcctgctgccc
gactcggtccactacgtcttcctctcggccaccatacccaacgccagacagttcgctgag
tggatcacctacctgcacaagcagccgtgtcacgtggtgtacacggacttccggccgacg
ccgctgcagcactacatctacccgtccggcggcgacggtatccacctggtggtcgacgag
cagggcacgttccgcgaggacaacttcagcgccgcgatggccggtctggcgaacccgagt
gacgcggcgcgcaagacccgcggccccggcaacaaggccggctccaaggagggcaccaac
gtctacaagatcatcaagatggtgatggagcgcaacctggcgcctgtcatcgtcttcagc
ttcagcaagaaggagtgcgaggcgtacgccctgcagatggccaagctggacttcaacacc
ggcgacgagaagcggctggtggaggaggtgttcaacaacgcgatggacgtgctgtcggaa
gaggaccggcagctgccgcaggtggagcacgtgctgccgctgctacggcgtggcatcggc
atccaccacggtggcctgctgcccatactgaaggagacgatcgagatcctgttcggagaa
ggtctgatcaaggcgctattcgccactgagacgttcgccatgggcctgaacatgccggcc
cgcactgtgctcttcactggctgcaggaagtttgacggcaaggacttccgatggctgtcg
tctggcgagtacatccagatgtcgggcagggccggccggcgaggcaaggacgacaagggc
atcgtcatcctcatggtggacgagagcatgtcgccggccgtggggaagaacctggtgaag
ggcatggccgacccgctcaactcggccttccacctcacatacaacatggtactgaacctg
cttcgcgtggaggagatcaaccccgagtacatgctggagcgctccttcttccagttccag
aactacgccgccattccaggactgtgcgaccgggtgaacaaggcgcgcaccagtcacgac
gctctcagcatcgcgcgcgaagccgaggtggcctcctactacaagctgcgcatgcagctg
gccgcgctcaagaaggactaccagaagtacatcacgctgcccaagtacatcgtgccgttc
ctgaacccgggccgcgtggtgcacgtccagacggacgacaaggacttcgactggtgcatc
gtcatcaactacaagcgggaggaggccaagaagacggacaacccgctggagtccagcgcc
acgtacgtggtggacgtgctgatgcacgtctccaaggagacggcccagctgaaggagaca
gcgctgctggagccgccgccgactgaccagaagggcgagatggtggtggtgccagtactg
gtgcacctgatcgacgaaatcagcgccgttcggctcaagtacccgcaggaccttcggccg
ctcgacaaccggatgattgtcctcaagaccatcaaggagatgaagcggcgcttcccggcg
ggcgtgccgcggctggacgccgtcaaggacatgggcatccgggaccgtgagttcgtctcg
ctggtggagaagatcgagtcgtttgagcgccgcctcttctcccatccgctgcacgacgac
ccgcatctcgacgagctctacaaccagtacgtcgagaaggtggagctgaacaacgagctg
aaagcggccaagctggagctgcgccgcgccaaatcgctactgcagatggacgagctcaag
tgccggaagcgcgtgctgcgccggctcggctactgcacggccgctggggtcatcgaggtc
aagggtcgcgtcgcgtgcgagctcagcagtgccgacgagctgctaatcaccgagatgatc
ttcaacggcatgttcaacgagctgacggtgccgcagtcggtggcgctcatgtcctgcttc
accttcgacgagaagtcaaatgatgcgcccaagctgcaggaccagctgtcgggcgcgctc
cgacagatgcaggagctcgcccgccggatagcgcgcgtcagcgtcgaggccaagctggag
ctggacgaggagcagtacgttggccagttcaagccggccatgatggatgtcgtcaacgcc
tggtgccagggctccagcttcggcgagctctgcaagatgacggacgcctttgaaggcagc
atcatccgctgtatgcgtcggctggaggagctgctgcgccagatggtgcaggccgccaag
ggaatcggcaacaccgacctcgagaacaagttcagcgagggcatacgcctgctgaagagg
gacattgtgttcgctgccagcttgtacctgtag
DBGET
integrated database retrieval system
