Pollicipes pollicipes (gooseneck barnacle): 119099722
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Entry
119099722 CDS
T08250
Name
(RefSeq) 3'-5' RNA helicase YTHDC2-like
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
ppoi
Pollicipes pollicipes (gooseneck barnacle)
Brite
KEGG Orthology (KO) [BR:
ppoi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppoi03041
]
119099722
Enzymes [BR:
ppoi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119099722
Spliceosome [BR:
ppoi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
119099722
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
HA2_C
OB_NTP_bind
Helicase_C
R3H
DEAD
Ank_2
HA2_N
AAA_19
Ank_5
TFIIA
Ank
ATPase
AAA_22
nSTAND3
ABC_tran
AAA_29
AAA_16
AAA_7
Spt20_SEP
SRP54
Motif
Other DBs
NCBI-GeneID:
119099722
NCBI-ProteinID:
XP_037078679
LinkDB
All DBs
Position
Unknown
AA seq
1364 aa
AA seq
DB search
MPRKKTQPAMIGEELRIAVTLALQNFRLQEDQAEIEFPSSLTSTERAYIHKLADSTGLKS
KSRGKAANRFLTVYKKNGSSIVQADAVFQLVRMSRHHVSSLLSKFPVTNRERQELLPPTE
RDRLLQPEVRDVNRATGRLNSGIPQVPCARGGGELSRAGQELPIWPLRDEILRTVAQNQV
TLLVGDTGSGKTTQVPQFLLDQYQAAGRPLRILCTQPRRISALTVAERVAAERDEQIGQT
VGYQIRLESRVSPKTLLTFCTSGVLLRTLMGGDGALATVTHVIVDEIHERDRFADFLMAV
LRDSISKYRNLKIILMSATMDTQLFVKYFHVCPVVKIPGKMFEVKEYFLEDALRDTGFTS
AAMERVRAELRTQQALSSWTERANEKPAAGAAAALDRPSIPAPILGQQSEPTPDRTELEP
WLVDLMDRCISAAWLSASDDAFTQLLHLIMTENVSVDYQHSATSATPLMVSAGRGNLNAV
EQLLNLGASTAVRASNGWTARDWALRTQQTEAVELLDAYGPTLTADQEAADSQLSEEDRQ
LLQCYQLSHDDERVDVDLVVALLKLICTGKQPGSALVFLPGYDDLVRVREVLSESRWFTE
SGQHTLFVLHSNMQSGDQRRVFQPAAPGTRKVVLSTNIAETSVTIQDIVFVIDTGKVKEK
SFDSITGVSQLRPTWVSRASAVQRRGRAGRCQPGVCYHLFSRSRFLALQPYQTPEILRTP
LQELCLHSKMLSPPNTPIADFLAKTPEPPPFMVTRAAVQLLKTIDALDPWEDVTELGHHL
LDLPVEPRLGKAVLYSIVLKCLDPVLTIVCCLAHRDPFVLPAVPAQKRAAAASRKKLAAA
TYSDHMTLLRAFQAWQKARNEGWERSFCAKNFVSSATMEVVVGMRTQLLGQLRASGFVRA
RGAGDIRDLNSNSENWAVVKAALCAGCYPNLVRVDREQVQLRTQRESRVRLHPSSTLVDA
PKSARTSVAQAHRSAVEALPADWLIYEELSRSGRVAHVRCCTLVSPITVALMAGPARLPL
DAVSEADAVLQGMRGDSYMEADSDSEVEERSEGQKTMLKLDEWVGFRVDTDAAHLALQLR
QKWHSLFIRRMRAPSKTWSQMDDNVIRTLIAVLTTEEQTLGLQQPPGIGQRPRPVISDVF
TAGGQQQQQQQQQQQAQQQQQAQQQQQRVSPDQTASRENRPEGGGGGGGGGPTASTPSLS
PTVGPLENGQHAAPNSCRYFIIKANSTRAVDASVTKCVWAFTPNTERKLLHNFKEGRTVL
LVFSAQGSGHFQGYAKFLGQNSSERCPELQGPNLGQSYKIEWVKRANVPFQATRHLINPV
QRAPARADEPRRPGGAAAGGRGAVSAAAAGRRKRPSWCLRAPER
NT seq
4095 nt
NT seq
+upstream
nt +downstream
nt
atgccgcggaaaaagacacagccggcgatgatcggcgaggagctgaggatcgccgttacc
ctggcgctgcagaacttccggctgcaggaggaccaggccgaaatcgaatttccctcttcg
ctcacatccacggagcgggcgtacattcacaaactggctgactctactggtctcaagtca
aaaagtcgagggaaggcggccaaccggttcctgaccgtgtataagaagaacggctcgagc
atcgtgcaggcggacgcagtgttccagctggtgcgcatgtcccgccaccatgtgagctcc
ctgctctccaagttccctgtgaccaaccgcgagcgccaggagctgctgccccccaccgag
cgggaccggctcctgcagccggaggtgcgggacgtgaaccgggcgacgggccggctcaac
agcggcatcccgcaggtgccgtgtgcgcgcggcggtggggagctcagtcgcgcgggccag
gagctgcccatctggccgctgcgcgacgagatcctgcgcaccgtggcgcagaatcaggtc
acgctgctggtcggcgacaccggctccggcaagaccacccaggtgccgcagttcctgctg
gaccagtaccaggcggccggccgcccgctgcgcatcctgtgcacgcagccgcgccgcatc
tcggcgctgaccgtagccgagcgggtggcggccgagcgtgacgagcagatcggccagacg
gtcggctaccagatccggctggagagcagggtctcgccgaagacgctgctgaccttctgc
acgagcggcgtgctgctgcgcacactgatgggcggcgacggcgcgctggccaccgtcaca
cacgtgatcgtggatgagatccacgagcgggaccgcttcgccgacttcctgatggccgtg
ctgcgcgacagcatctccaagtaccgcaacctcaagatcatcctcatgtcggccaccatg
gacacgcagctgttcgtcaaatacttccacgtctgccccgtcgtcaagatcccgggcaag
atgtttgaggtgaaggaatacttcctggaggacgcgctgcgcgacacgggcttcacttcg
gcggccatggagcgcgtgcgcgccgagctgcgcacccagcaggcgctcagctcgtggacc
gagcgcgccaacgagaagccggcggccggcgctgccgccgcgctcgaccggcccagcatc
ccggcgccgatcctcggacagcagtcagagccgacgcccgaccggacggagctggagccg
tggctggtggaccttatggaccgctgcatcagcgccgcctggctctccgcctcggatgac
gccttcacccagctgctgcacctcatcatgaccgagaacgtctcggtcgactaccagcac
tcggccacctcagcgacgcccctgatggtgtccgccggccgaggcaacctcaacgccgtg
gagcagctgctgaacctgggcgccagcacggccgtgcgcgccagcaacggctggacggcg
cgcgactgggcgctgcgcacccagcagaccgaggcggtggagctgctggacgcgtacggt
ccgacgctgaccgccgaccaggaggcggccgacagtcagctgtcggaggaggaccgccag
ctgctgcagtgctaccagctcagccacgacgacgagcgcgtcgacgtggacctggtggtg
gcgctgctgaagctgatctgtaccggcaagcagcccgggagcgcgctggtcttcctgccc
gggtacgatgacctggtgcgggtgcgcgaggtgctgtctgagtcccgctggttcaccgag
agcggacagcacaccctgtttgtgctgcactcgaacatgcagagcggcgaccagcggcgc
gtcttccagccggcggcgcccggcacgcgcaaggtggtgctctccaccaacatcgctgag
acgagcgtcaccatccaggacatcgtgttcgtcatcgataccggcaaggtcaaggagaaa
tcgttcgactcgatcacgggcgtctcgcagctgcggcccacctgggtcagccgcgcgtcg
gccgtgcagcgccgcggccgcgccggccgctgccagccgggcgtctgctaccatctgttc
tcgcgcagccgcttcctggcgctgcagccgtaccagacgcccgagatactgcggacgccg
ctgcaggaactgtgtctgcacagcaagatgctgtcgccacccaacacaccgatcgccgac
ttcctggccaagacgcccgagccgccgccgttcatggtcaccagagctgccgtccagctg
ctcaagacgatcgacgccctggacccgtgggaggacgtgaccgagctgggccaccacctg
ctcgacctgcccgtggagccgcgcctcggcaaggccgtgctctactccatcgtgctcaag
tgcctggacccggtgctcaccattgtctgttgcctggcgcaccgggacccgttcgtcctg
ccggcggtgcctgctcagaagagggcggccgccgccagccggaagaagctggccgctgcc
acctacagcgaccacatgacactgctgcgtgcgttccaggcgtggcagaaggcacgcaac
gagggctgggagcgctcgttctgcgccaagaacttcgtgagcagcgccaccatggaggtc
gtggtgggcatgcgcacccagctgctgggccagctacgcgcctcgggcttcgtgcgggca
cgcggcgccggcgacatcagggatctcaactccaactctgagaactgggctgtggtgaag
gcggccctctgcgccggctgctaccccaacctggtgcgcgtggaccgcgagcaggtgcag
ctgcgcacacaacgcgagagccgcgtccgcctccacccgtcctcgacgctggtggacgcg
cccaagtcggcgcgcacgagcgtggcgcaggcgcaccgctcggccgtcgaggcgctgccg
gccgactggctgatctacgaggagctgtcgcgctcggggcgcgtggcgcacgtgcgctgc
tgcacgctggtcagcccgatcacggtggcgctgatggccggcccggcgcgcctgccactg
gacgcggtctccgaggcggacgccgtgctgcaggggatgcgcggcgactcctacatggag
gccgactcggacagcgaggtggaggaacgctccgagggccagaagaccatgctcaagctg
gacgagtgggtcggcttccgtgtggacacggacgcggcacacctggcactccagctgcga
cagaagtggcactcgctcttcatccgccgcatgcgcgcaccctccaagacgtggtcgcag
atggacgacaacgtgatccggacgctgatcgcggtgctgacgaccgaggagcagacgctg
ggcctgcagcagccgcccggcatcggccagcgtccgcgccccgtcatcagcgacgtgttc
accgccggcggccagcagcaacagcagcagcagcagcagcagcaggcgcagcagcagcag
caggcgcagcagcagcagcagagggtgtcaccagatcagactgccagccgtgagaatcgg
ccggagggcggcggcggcggcggcggcggcgggccgacggccagcacaccgtctctctct
ccgaccgtgggcccgctggagaacggccagcacgcggcgcccaacagctgccgctacttc
atcatcaaggccaacagcacgcgcgccgtggacgcgtccgtcaccaagtgcgtgtgggcg
ttcacgccgaacacggagcgcaagctgctgcacaacttcaaggagggacgcaccgtgctc
ctggtgttcagcgcccagggctccggtcacttccagggctatgccaagttcctgggccag
aactcttccgagcgctgtccggagctgcaggggcccaacctgggccagtcgtacaagatc
gagtgggtgaagcgggccaacgtgcccttccaggcgacgcgtcacctcatcaatcccgta
caacgagcaccggcgcgtgcagacgagccgcgacggccaggaggtgcagccgcaggtggg
cgcggcgctgtgtcggctgcggcggcggggcggcggaaacggcccagctggtgcctgcgg
gctccagagcggtga
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