Pollicipes pollicipes (gooseneck barnacle): 119100622
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Entry
119100622 CDS
T08250
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ppoi
Pollicipes pollicipes (gooseneck barnacle)
Pathway
ppoi03013
Nucleocytoplasmic transport
ppoi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppoi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119100622
03015 mRNA surveillance pathway
119100622
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppoi03019
]
119100622
Enzymes [BR:
ppoi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
119100622
5.6.2.5 RNA 5'-3' helicase
119100622
Messenger RNA biogenesis [BR:
ppoi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
119100622
mRNA cycle factors
Common to processing body (P body) and stress granule
119100622
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_19
AAA_30
ResIII
SLFN-g3_helicase
UvrD-helicase
NPHP3_N
Helicase_RecD
DEAD
ATPase
AAA_16
nSTAND3
SRP54
AAA_22
DUF5622
Motif
Other DBs
NCBI-GeneID:
119100622
NCBI-ProteinID:
XP_037079595
LinkDB
All DBs
Position
Unknown
AA seq
1031 aa
AA seq
DB search
MQNRQELPAHACKYCGIHDPGCVVMCNICKRWFCNGRGNTSGSHIVNHLVRAKHKEVTLH
RNGPLGETVLECYSCGVRNVFVMGFIPAKANSVVVLLCRQPCAAQTALRDVNWDPEQWKP
LILDRSFLSWLVKVPSEQEQLRARQISAQQINKLEELWKDNVDATFQDLEKPGVDEDPNQ
VLLRYEDGYQYQNIFGPLVKLEADYDKKLKESQTQDNIEVRWDQGLNKKTIAYFSMAKTD
GDMRLMHGDELRIRYLGEMHKPWSGVGHVIKVSDNHGDEVGIELKNNSGIPLECTHNFVV
DFVWKSTSFDRMQAALKKFAVDDQSVSSYIYHRLLGHEIDEVLFRCHLPKHFSAPNLPEL
NRSQVFAVKSALQRPLSLIQGPPGTGKTVTSATIVYHLVKQTHGSVLVCAPSNIAVDQLT
EKIHQTGLKVVRVCAKSREAIDSPVSYLALHIQVRNLPSSGELLKLQQLMDEAGELSAAD
EKRFRILKKTAEKELLEAADVICCTCVGAGDPRLARLRFQSILIDESMQATEPECMVPVV
LGAKQLILVGDHCQLGPVVMCKQAARAGLSQSLFERLVVLGIRPFRLEVQYRMHPALSRF
PSDFFYEGSLQNGVVPDERKLKAVDFPWPQPDTPMFFFVTSGQEEIAGSGTSYLNRTEAA
NVEKVVTRFLKAGLKPEQIGVITPYEGQRSYLVTNMQYQGSLHAKLYQEVEVASVDAFQG
REKDVIIMSCVRSNEHQGIGFLNDPRRLNVALTRARFGIIIIGNPKVLSKQPLWNHLLTF
YKEQKVLVEGTLNSFKESMIQFTKPRTLVNTINPGQHFMRTTTYDARQAMVPGSMYDRSG
QMNGMANPYMGRGMGMVDFSRTHDPMGYISPEHAQAALNVSLPVSMFMNMSHIPPRFFNQ
HQQSMQGRDAGRGRGGMRRGRGGRPSAGPVGSQGSQGLSQQGYSQDGTQPYTQQAGVQLT
QNMSQSMSQPGGGFSLSQPGLSQPELSQDPYAMGEFHSQADGLLSQDSTYQGDRSAFLPG
ASQGAPFSQPY
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaacaggcaggagctgccggcgcacgcgtgcaagtactgcggcatccacgacccc
ggctgcgtggtcatgtgcaacatctgcaaacgctggttctgcaacggccgcggcaacacg
tccggctcgcacatcgtcaaccatctggtgcgggccaagcacaaggaggtgaccctgcac
agaaacggcccactgggcgagacggtgctcgagtgctactcgtgcggcgtgcggaacgtg
ttcgtgatgggcttcatcccggccaaggccaattcggtggtggtgctgctgtgtcggcag
ccgtgcgccgcacagacggctctgcgcgacgtcaactgggatccggaacagtggaagcca
ctgatcctggaccggagcttcctctcgtggcttgtgaaggtgccttcggagcaggagcag
ctgcgcgcccgccagatctccgcccagcagatcaacaagctggaggagctgtggaaggac
aatgtggacgccaccttccaggacttggagaagccgggtgtggacgaggatcccaaccaa
gttctgctcagatacgaggacggctaccagtaccagaacatctttggcccactggtgaag
ctggaggcagactatgacaagaagctgaaggagtcgcagacgcaggataacatcgaggtg
cgctgggaccaggggctcaacaagaagaccatcgcctacttcagcatggccaagactgat
ggagacatgcgtctgatgcatggcgacgagctgcgcatccgctacctgggggagatgcac
aagccctggtcgggcgtcggccacgtcatcaaggtgtccgacaaccacggcgacgaggtc
ggcatcgagctcaagaacaactcgggcatcccgctggagtgcacacacaacttcgtggtc
gacttcgtctggaagtccacctcgttcgacagaatgcaggcggcgctgaagaagttcgcc
gtggacgaccagtcggtgtcgtcttacatctaccaccggctgttgggccacgagatcgac
gaggtcctcttccgctgccacctgcccaaacacttctcggcgcccaacctgcccgagctg
aaccggtcccaggtgttcgccgtcaagtcggcccttcagcgtccactgtcactgatccag
ggcccgcccggcaccggcaagacggtcacctcggccaccatcgtgtaccacctggtcaag
cagacccacggcagcgtgctggtgtgcgcgccgtccaacatcgccgtggaccagctgacg
gagaagatccaccagacggggctcaaggtggtgcgcgtgtgcgccaagtcgcgcgaggcc
atcgacagtcctgtgtcgtacctggcgctgcacatccaggtccgcaacctgcccagctct
ggtgagctgctgaagctgcagcagctgatggacgaggctggcgagctgtccgccgccgac
gagaagcgcttccgcatcctcaagaagacggccgaaaaggagctgctggaggcggccgac
gtgatctgctgcacgtgcgtgggcgccggcgacccgcggctcgctcgactccgcttccag
tccatcctcatcgacgagagcatgcaggccacggagcccgagtgcatggtgccggtggtg
ctgggcgccaaacagctgatcctggtgggagaccactgccagctggggccggtggtgatg
tgtaagcaggcggcgcgcgccggcctctcgcagtcgctgttcgagcgtctggtggtgctg
ggcatccggccgttccgcctggaggtgcagtaccgtatgcacccggcgctcagccgcttc
ccctccgacttcttctacgagggcagcctgcagaacggcgtcgtgcccgacgagcggaag
ctgaaggcggtggacttcccgtggccgcagccggacacgcccatgttcttcttcgtgacg
tcgggccaggaggagatcgccggctcgggcacctcttacctgaaccgcaccgaggcggcc
aacgtcgagaaggtggtgacgcgcttcctgaaggccggcctcaagccggagcagatcggc
gtcatcacgccgtacgagggacagcgcagctacctggtcaccaacatgcagtaccagggc
tcgctgcatgccaagctgtaccaggaggtggaggtggccagcgtggacgccttccagggt
cgcgagaaggacgtaatcatcatgtcgtgcgtgcgctccaacgagcaccagggcatcggc
ttcctgaacgacccgcgccgcctgaacgtggccctgacacgtgccaggttcggcatcatt
atcatcggcaacccgaaggtgctctccaagcagccgctgtggaaccacctgttgaccttc
tacaaggagcagaaggtgctggtggagggcacgctcaacagcttcaaggaatccatgatc
cagttcaccaagccgcgcacgctggtgaacaccatcaacccgggccagcacttcatgcgc
acgaccacctacgacgctcgccaggccatggtgcccggcagcatgtacgaccgcagcggc
cagatgaacggcatggccaacccctacatgggccgaggcatgggtatggtggacttctcg
cgcacccacgacccgatgggctacatatcgcccgagcacgcgcaggcggcgctcaacgtg
tcgctgccggtcagcatgttcatgaacatgtcgcacatcccgccgcgcttcttcaaccag
caccagcagagcatgcagggtcgggacgccggccgaggtcggggcggcatgcgccggggc
cgcggcggccgccccagcgccggcccggtgggctcgcagggctcgcagggcctgtcgcag
cagggctacagccaggacggcacccagccgtacacccagcaggccggcgtccagctcacg
cagaacatgtcacagtcgatgtcgcagccgggcggcggcttcagcctgtcgcagccgggc
ctgtcgcagccggagctgtcgcaggacccgtacgccatgggcgagttccactcgcaggcg
gacggcctgctgtcgcaggactccacctaccagggcgaccgcagcgcctttctgccgggc
gcctctcagggcgcgccattctcccagccctactga
DBGET
integrated database retrieval system
