Pollicipes pollicipes (gooseneck barnacle): 119100794
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Entry
119100794 CDS
T08250
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ppoi
Pollicipes pollicipes (gooseneck barnacle)
Pathway
ppoi03013
Nucleocytoplasmic transport
ppoi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppoi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119100794
03015 mRNA surveillance pathway
119100794
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppoi03019
]
119100794
Enzymes [BR:
ppoi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
119100794
5.6.2.5 RNA 5'-3' helicase
119100794
Messenger RNA biogenesis [BR:
ppoi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
119100794
mRNA cycle factors
Common to processing body (P body) and stress granule
119100794
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_19
AAA_30
ResIII
SLFN-g3_helicase
UvrD-helicase
NPHP3_N
Helicase_RecD
DEAD
ATPase
AAA_16
nSTAND3
SRP54
AAA_22
DUF5622
Motif
Other DBs
NCBI-GeneID:
119100794
NCBI-ProteinID:
XP_037079827
LinkDB
All DBs
Position
Unknown
AA seq
1115 aa
AA seq
DB search
MSEDTFNGSSQPLSFLEPDENDMLGADTQGSEFDFTDFTVPSQSQTLASQIDLASQLNGQ
SLNGDISQVTSQLGELQFEEEDEDGFYNKELPAHACKYCGIHDPGCVVMCNICKRWFCNG
RGNTSGSHIVNHLVRAKHKEVTLHRNGPLGETVLECYSCGVRNVFVMGFIPAKANSVVVL
LCRQPCAAQTALRDVNWDPEQWKPLILDRSFLSWLVKVPSEQEQLRARQISAQQINKLEE
LWKDNVDATFQDLEKPGVDEDPNQVLLRYEDGYQYQNIFGPLVKLEADYDKKLKESQTQD
NIEVRWDQGLNKKTIAYFSMAKTDGDMRLMHGDELRIRYLGEMHKPWSGVGHVIKVSDNH
GDEVGIELKNNSGIPLECTHNFVVDFVWKSTSFDRMQAALKKFAVDDQSVSSYIYHRLLG
HEIDEVLFRCHLPKHFSAPNLPELNRSQVFAVKSALQRPLSLIQGPPGTGKTVTSATIVY
HLVKQTHGSVLVCAPSNIAVDQLTEKIHQTGLKVVRVCAKSREAIDSPVSYLALHIQVRN
LPSSGELLKLQQLMDEAGELSAADEKRFRILKKTAEKELLEAADVICCTCVGAGDPRLAR
LRFQSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKQAARAGLSQSLFER
LVVLGIRPFRLEVQYRMHPALSRFPSDFFYEGSLQNGVVPDERKLKAVDFPWPQPDTPMF
FFVTSGQEEIAGSGTSYLNRTEAANVEKVVTRFLKAGLKPEQIGVITPYEGQRSYLVTNM
QYQGSLHAKLYQEVEVASVDAFQGREKDVIIMSCVRSNEHQGIGFLNDPRRLNVALTRAR
FGIIIIGNPKVLSKQPLWNHLLTFYKEQKVLVEGTLNSFKESMIQFTKPRTLVNTINPGQ
HFMRTTTYDARQAMVPGSMYDRSGQMNGMANPYMGRGMGMVDFSRTHDPMGYISPEHAQA
ALNVSLPVSMFMNMSHIPPRFFNQHQQSMQGRDAGRGRGGMRRGRGGRPSAGPVGSQGSQ
GLSQQGYSQDGTQPYTQQAGVQLTQNMSQSMSQPGGGFSLSQPGLSQPELSQDPYAMGEF
HSQADGLLSQDSTYQGDRSAFLPGASQGAPFSQPY
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaagatacgttcaatggaagctctcaaccattgagtttcctggaacctgatgaa
aatgacatgctgggagcagatacacagggttcagaatttgacttcacagatttcacagtg
ccatcccagagtcaaactcttgcttcccagattgacttggcctcacagttgaatggccaa
agcctgaatggagacatcagtcaagtgacatcacagcttggggagctccagtttgaagag
gaagatgaagatggtttctacaataaggagctgccggcgcacgcgtgcaagtactgcggc
atccacgaccccggctgcgtggtcatgtgcaacatctgcaaacgctggttctgcaacggt
cgcggcaacacgtccggctcgcacatcgtcaaccatctggtgcgggccaagcacaaggag
gtgaccctgcacaggaacggcccgctgggcgagacggtgctcgagtgctactcgtgcggc
gtgcggaacgtgttcgtgatgggcttcatcccggccaaggccaactcggtggtggtgctg
ctgtgtcggcagccgtgcgccgcgcagacagccctccgcgacgtcaactgggatccggaa
cagtggaagccactgatcctggaccggagcttcctctcgtggcttgtgaaggtgccctcg
gagcaggagcagctgcgcgcccgccagatctccgcccagcagatcaacaagctggaggag
ctgtggaaggacaatgtggacgccaccttccaggacttggagaagccgggtgtggacgag
gatcccaaccaagtcctgctcagatacgaggacggctaccagtaccagaacatctttggc
ccgctggtgaagctggaagcagactatgacaagaagctgaaggagtcgcagacgcaggat
aacatcgaggtgcgctgggaccaggggctcaacaagaagaccatcgcctacttcagcatg
gccaagactgatggagacatgcgtctgatgcacggcgacgagctgcgcatccgctacctg
ggggagatgcacaagccctggtcgggcgtcggccacgtcatcaaggtgtccgacaaccac
ggcgacgaggtcggcatcgagctcaagaacaactcgggcatcccgctggagtgcacacac
aacttcgtggtcgacttcgtctggaagtccacctcgttcgacagaatgcaggcggcgctg
aagaagttcgccgtggacgaccagtcggtgtcgtcttacatctaccaccggctgttgggc
cacgagatcgacgaggtcctcttccgctgccacctgcccaaacacttctcggcgcccaac
ctgcccgagctgaaccggtcccaggtgttcgccgtcaagtcggcccttcagcgtccactg
tcactgatccagggcccgcccggcaccggcaagacggtcacctcggccaccatcgtgtac
cacctggtcaagcagacccacggcagcgtgctggtgtgcgcgccgtccaacatcgccgtg
gaccagctgacggagaagatccaccagacggggctcaaggtggtgcgcgtgtgcgccaag
tcgcgcgaggccatcgacagtcctgtgtcgtacctggcgctgcacatccaggtccgcaac
ctgcccagctctggtgagctgctgaagctgcagcagctgatggacgaggctggcgagctg
tccgccgccgacgagaagcgcttccgcatcctcaagaagacggccgaaaaggagctgctg
gaggcggccgacgtgatctgctgcacgtgcgtgggcgccggcgacccgcggctcgctcga
ctccgcttccagtccattctcatcgacgagagcatgcaggccacggagcccgagtgcatg
gtgccggtggtgctgggcgccaaacagctgatcctggtgggagaccactgccagctgggg
ccggtggtgatgtgtaagcaggcggcgcgcgccggcctctcgcagtcgctgttcgagcgt
ctggtggtgctgggcatccggccgttccgcctggaggtgcagtaccgtatgcacccggcg
ctcagccgcttcccctccgacttcttctacgagggcagcctgcagaacggcgtcgtgccc
gacgagcggaagctgaaggcggtggacttcccgtggccgcagccggacacgcccatgttc
ttcttcgtgacgtcgggccaggaggagatcgccggctcgggcacctcttacctgaaccgc
accgaggcggccaacgtcgagaaggtggtgacgcgcttcctgaaggccggcctcaagccg
gagcagatcggcgtcatcacgccgtacgagggacagcgcagctacctggtcaccaacatg
cagtaccagggctcgctgcatgccaagctgtaccaggaggtggaggtggccagcgtggac
gccttccagggtcgcgagaaggacgtgatcatcatgtcgtgcgtgcgctccaacgagcac
cagggcatcggcttcctgaacgacccgcgccgcctgaacgtggccctgacacgtgccagg
ttcggcatcattatcatcggcaacccgaaggtgctctccaagcagccgctgtggaaccac
ctgttgaccttctacaaggagcagaaggtgctggtggagggcacgctcaacagcttcaag
gaatccatgatccagttcaccaagccgcgcacgctggtgaacaccatcaacccgggccag
cacttcatgcgcacgaccacctacgacgctcgccaggcaatggtgcccggcagcatgtac
gaccgcagcggccagatgaacggcatggccaacccctacatgggccgaggcatgggtatg
gtggacttctcgcgcacccacgacccgatgggctacatatcgcccgagcacgcgcaggcg
gcgctcaacgtgtcgctgccggtcagcatgttcatgaacatgtcgcacatcccgccgcgc
ttcttcaaccagcaccagcagagcatgcagggtcgggacgccggccgaggtcggggcggc
atgcgccggggccgcggcggccgccccagcgccggcccggtgggctcgcagggctcgcag
ggcctgtcgcagcagggctacagccaggacggcacccagccgtacacccagcaggccggc
gtccagctcacgcagaacatgtcacagtcgatgtcgcagccgggcggcggcttcagcctg
tcgcagccgggcctgtcgcagccggagctgtcgcaggacccgtacgccatgggcgagttc
cactcgcaggcggacggcctgctgtcgcaggactccacctaccagggcgaccgcagcgcc
tttctgccgggcgcctctcagggcgcgccattctcccagccctactga
DBGET
integrated database retrieval system
