Pollicipes pollicipes (gooseneck barnacle): 119100826
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Entry
119100826 CDS
T08250
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein Msh2-like
KO
K08735
DNA mismatch repair protein MSH2
Organism
ppoi
Pollicipes pollicipes (gooseneck barnacle)
Pathway
ppoi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppoi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
119100826
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppoi03400
]
119100826
DNA repair and recombination proteins [BR:
ppoi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
119100826
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
MCU
Motif
Other DBs
NCBI-GeneID:
119100826
NCBI-ProteinID:
XP_037079871
LinkDB
All DBs
Position
Unknown
AA seq
930 aa
AA seq
DB search
MASLLPIQKELSDASQEKGFQSFFRKLPEKPSTTIRLFDRNDFYTVHGEDAHVAARRVFK
TASVIRQFREGEHKLDYVTLSKLNFESFVRELLLVLRYRVEVYRCQGSNIKTSSDWKLEF
QGSPGNLTQFEELLFGAGGMQESSGVLAVRVTQQDGGTTVGAALGDATLQQFLVAEFADS
ASLSNLEALLVQLGPKECLVSAGDPAADAVKQMMERSGVLLTELKRADFTSRDVVPDLSR
LLKFGKGRQADAALLPETGRPLAMAATAALIKYLQLLADEQNMGQFSLSTFDLTQYMRLD
SAAVEAFNLLPTPQDTAASHSLLGLLNRCRTPQGSRLLAQWIKQPLVDVKRIDERLDLVE
TLTEDTELRQTLLEDHLRRMPDFQRLTKRLQRRKAGLQDCCRVYQAVRCVPTLLARLEES
DGRHVAVLRATFIEPLQRTHKEFEKFQEMVQTTVDMDRADKGEFVVRPEFDDQLEELRQK
INQLEAQVEKQLRRVAADLGLEAHKTLKLESTAQTGFFFRVTKKEEKLLRNNKMYQTLET
NKSGVKFRSSALAALNDEHQTTRAAYTEQQRAVVAEIVNIAAGYLEPMLALNDVTARLDA
LVALATAGVSAPQPYVRPRLLAPDEPGPTRLVQVRHPCVEMQDGLAYIPNDVEFERGVST
FKVITGPNMGGKSTYIRSVAVAVVMAQVGCFVPCESAQLRPVDAVMARVGAGDCQMKGVS
TFMAEMLETAAILRSATKDSLIVIDELGRGTSTYDGFGLAWAISSEHIARELGAFTLFAT
HFHELSALAAEVPAVQNLYVTALTAGQELTFLYKVQPGVCDQSFGIHVAEMVKFPRQVIE
DARSRAGELEDFYGSHQAATAELAGPPEKRARADGDQASEVITSFLEQYDRLGADLSPEE
RRRAVTELMDGVRSRQDPYVSHVLSRLGLH
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atggcatcacttctgccaattcaaaaggaactctcagatgcatctcaggagaaaggcttt
cagtcatttttccggaagctcccagagaaaccgtcgacgacgatacgcctgttcgaccgt
aatgacttttacacagtgcacggcgaggacgcgcatgtggcggcgcgacgcgtgttcaag
acggcctccgtcatccgacagttccgcgagggggagcacaagctggactatgtgacgctc
agcaagttgaacttcgagagcttcgtgcgcgagctgctactggtgctgcgctaccgcgtg
gaggtgtaccgctgccagggcagcaacatcaagaccagcagtgactggaagctggagttc
cagggctcgccgggcaacctgacccagttcgaggagctgctgttcggcgccggcggcatg
caggagagcagcggcgtgttagccgtcagggtgactcagcaggacggtgggacgacggtg
ggtgccgctctgggcgacgccacgctgcagcagttcctggtggccgagttcgccgacagc
gcctctctgtcaaacctggaggcccttctcgtccagctggggccgaaggagtgcctcgtt
tctgccggagacccggctgccgacgccgtcaaacagatgatggagcgcagtggggtgctg
ctgacggagctgaagcgggccgacttcacctcccgtgacgtggtgcccgacctcagccgc
cttctcaagttcggcaagggccgccaggccgacgcggccctgctgccggagacgggccgc
ccgctggccatggccgccaccgccgcgctcatcaagtacctgcagctactggctgacgaa
caaaacatgggccagttcagtctgagcacgtttgacctgacccagtacatgcggctggac
tcggcggccgtcgaggccttcaacctgctgccgacgccacaggacacggccgcctcacac
agtcttctgggcttgctcaaccgctgccgcacaccgcagggctcccggctgttggctcag
tggatcaagcagccactggtggacgtcaaacgcatagatgagcggctggacctggtggag
acactgacggaggacactgagttgcgccagacactgctggaggaccacctgcggcgcatg
cccgacttccagcggctgaccaagcggctgcagcggcgcaaggccggccttcaggactgc
tgcagggtgtaccaggcggtgcggtgtgtgcccacgctgctggcgcggctggaggagagc
gacggccggcacgtcgctgtcctgcgcgccaccttcatcgaaccgctacagaggacgcac
aaggagttcgagaagttccaggagatggtccagaccacagtcgacatggacagggccgac
aagggggagtttgtggtcaggcctgaattcgacgaccagctggaagagctgcgacagaag
ataaaccagctggaggcgcaggtggagaagcagctgcggagggtggccgccgacctcggc
ctggaggcgcacaaaacgctgaagctggagagcaccgcgcagaccggcttcttcttccgc
gttacgaaaaaggaggagaagctgctgcgaaacaacaagatgtatcagacgctcgagacc
aacaagagcggcgtcaagttccggtcgagcgcgctggccgcgctcaacgacgagcaccag
acgacgcgcgccgcctacaccgagcagcagcgcgccgtcgtcgccgagatcgtcaacatc
gccgctggatacttggagcctatgctggcgctgaatgatgtgacggcccggctggacgca
ctggttgccctggcaacggcaggggtgtccgccccgcagccgtacgtacggccgcgcctg
ctggcgccggacgagccaggtccgacgcggctggtgcaggtccggcacccctgcgtggag
atgcaggacggtctggcttacattcccaacgacgtggagttcgagcgaggcgtgtcgacg
ttcaaggtgatcacgggccccaacatgggcggcaagtccacctacatccgctcggtggcc
gtggccgtggtcatggcccaggtcggctgcttcgtcccctgcgagagtgcccagctgcgg
ccggtggatgccgtcatggcgcgcgtcggagccggagactgccagatgaagggcgtctcg
accttcatggcggagatgctggagacggccgccattctcaggtcagccaccaaggactcc
ctgatcgtcatcgatgagctgggccgcggcacttccacctacgacggctttggcctggcc
tgggccatctcgagtgagcacatcgcgcgcgagctgggcgccttcacgctgttcgccacc
cacttccatgagctgtcagcgctggcggccgaggtgccggccgtgcaaaacctgtacgtg
acggcactgacggccgggcaggagctcaccttcctctacaaggtgcagccgggcgtctgc
gaccagagcttcggcatccacgtggccgagatggtcaagtttccgcggcaggtgatcgag
gacgcgcgcagccgagctggcgagctggaggacttctacggctcgcaccaggcggccacg
gccgagctggccggcccgcccgagaagcgggcccgcgccgacggagaccaggcgagcgag
gtcattacttcgttcctggagcagtatgaccgactgggcgccgacctgagcccggaggag
cggcgccgggccgtcaccgagctcatggacggcgtcaggagccggcaggacccgtacgtc
agtcacgtgctgtcccggctggggctccactga
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