Pollicipes pollicipes (gooseneck barnacle): 119102516
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Entry
119102516 CDS
T08250
Name
(RefSeq) pre-mRNA-processing factor 6-like
KO
K12855
pre-mRNA-processing factor 6
Organism
ppoi
Pollicipes pollicipes (gooseneck barnacle)
Pathway
ppoi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppoi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119102516
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppoi03041
]
119102516
Spliceosome [BR:
ppoi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
119102516
Complex C
U5 SnRNP specific factors
119102516
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_14
TPR_19
HAT_PRP39_N
PRP1_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_C
Suf
TPR_16
TPR_17
TPR_8
HAT_Syf1_CNRKL1_N
TPR_2
FAT
ChAPs
TPR_1
TPR_21
UTP6_C
LPD22
CAF1A_acidic
NatA_aux_su
Motif
Other DBs
NCBI-GeneID:
119102516
NCBI-ProteinID:
XP_037081795
LinkDB
All DBs
Position
Unknown
AA seq
732 aa
AA seq
DB search
MDEKRKEYREKKLKEELERYRAERPKIQQQFSDLKRDLVQVSKDDWDNLPEVGDARNRKQ
RAPRAEKFTPLPDSVLGRSLGGESVHSIDASSGLASIVPGTASMAPGMVTPSGDLDLRKI
GQARNTLMNVKLNQVSDSVSGQTVVDPKGYLTDLQGMIPNFSSDINDIKKARLLMKSVRE
TNPQHPPAWIASARLEEVTGKLQNARNLIMKGCEACPNAEDVWLEAARLQPPDTAKGVVA
QAVRQLPNSVRLWLKAADLELELKGKRRVFRKALELQPNSVRLWKAAVELEEAEDARILL
SRAVECCPTAVELWLALARLETYENARKVLNKARENVPTDRQIWLSAAKLEEANDNAPMV
VRIVERAIASLSANGVEINREFWLKDAVQCERAGSALTCQAVITAVIGYGVEEEDRKSQW
MEDAEACAAQGAVECARAIYAHALAAYPSKKSIWLAAAYFEKSHGTRESLETLLQQAVLH
CPRAEVLWLMGAKSKWLARDVPAARSILSMAFQANPNSEEIWLAAVKLESENNEYERARK
LLSKARSSAPTPRVLMKSAKLEWALNETAAALQLLEDGVQAFADFAKLWMMRGQILESLG
RDAEAKDVYNQGVKQCPLAVPMWRLLARLEERTGLQIRARSVLEKARLRNPQTPELVAGG
GTRGEPRWPGRHCWRPDGARSPGVPQLWPPLGGGHLHGRPYAPQDHLGGRAEEVRARRTR
AARRVQAVLGGA
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atggacgagaaacgcaaggaataccgcgaaaagaagctcaaagaggagctggagcggtac
cgcgccgagcggcccaagatccagcaacagttctccgacctgaagcgagacctggtgcag
gtctccaaagacgactgggacaacctgcccgaggtgggcgacgcgcggaaccgcaagcag
cgcgccccgcgcgccgagaagttcacgccgctgcccgactcggtgctgggccgaagtctg
ggcggcgagagcgtgcacagcatcgacgccagcagtggcttagcctcgatcgtgcccggc
acggcgtccatggcgcccggcatggtgacaccctcgggcgacctcgacctgcgcaagatc
ggccaggcgcgcaacacgctcatgaacgtcaaactgaaccaggtgtccgactcggtgtcg
ggccagacggtggttgacccgaagggctacctcaccgacctgcagggcatgattcccaac
ttctcgtccgacatcaacgatatcaagaaggcgcgcctgctgatgaagtcggtgcgcgag
acgaacccgcagcacccgcccgcctggatcgcctcggcccgcctcgaggaggtcaccggc
aagctgcagaacgcgcgcaacctcatcatgaagggctgcgaggcctgccccaacgccgag
gacgtgtggctggaggcagcgcgtctgcagccgcccgacacggccaagggcgtggtggcg
caggccgtccgccagctgcccaactcggtccggctctggctgaaggccgccgacctcgag
ctcgagctcaagggcaaacggcgcgtgttccgcaaggcgctcgagctgcagccgaactcg
gtgcgcctctggaaggcggctgtcgagctagaggaggcggaggacgcgcgcattctgctg
tcgcgcgccgtcgagtgctgcccgacggccgtcgagctgtggctggcgctggcgcggctc
gagacgtacgagaacgcgcgcaaggtgctgaacaaggcgcgcgagaacgtgccgacagac
cgccagatctggctgtcggccgccaagctcgaggaggccaacgataacgcgccgatggtg
gtgcgcattgtggagcgtgcgatcgcctcgctctcggccaacggcgtcgagatcaaccgc
gagttctggctgaaggacgccgtgcagtgcgagcgcgccggctcggcgctgacgtgccag
gccgttatcacggccgtcatcggctacggcgtcgaggaagaggaccgcaagagccagtgg
atggaggacgcagaggcgtgtgccgcgcaaggcgccgtcgagtgtgcgcgcgccatctac
gcgcacgctctggccgcgtaccccagcaagaagtccatctggctggcggccgcgtacttc
gagaagtcacacggcaccagggagagtctggagacgctgctgcagcaggccgttttgcac
tgccccagagctgaagtgctctggctgatgggcgccaagtcgaagtggttggcgcgggac
gtgccagcggcacgctccatcctgtcgatggccttccaagccaaccccaactcggaggag
atctggctggccgctgtcaagctcgagtccgagaacaacgagtacgagcgcgcgcgcaag
ctgctctccaaggcgcgctccagcgcccccacgcccagggtgctgatgaagtcggccaag
ctggagtgggctctgaacgagaccgccgccgcgctccagctgctcgaggacggcgtccag
gcgttcgccgacttcgccaagttgtggatgatgcgcggccagatccttgagtcgctcggc
cgcgacgctgaggccaaggacgtctacaaccagggggtgaagcagtgccccctggcggtg
cccatgtggcgactgctggcacggctcgaggagcgcaccggcctccagatccgcgcccgc
tccgtgctcgagaaggcgcgcctgcgcaacccgcagacccccgagctagtggctggaggc
ggtacgcgtggagagccgcgctggcctggccgacattgctggcggcctgatggcgcgcgc
tctccaggagtgccccaactctggcctcctctgggcggaggccatcttcatggccgaccg
tacgcgccgcaagaccacctcggtggacgcgctgaagaagtgcgagcacgacgcacacgt
gctgctcgccgtgtccaagctgttctgggcggagcgtaa
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integrated database retrieval system
