Pollicipes pollicipes (gooseneck barnacle): 119103298
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Entry
119103298 CDS
T08250
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
ppoi
Pollicipes pollicipes (gooseneck barnacle)
Pathway
ppoi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppoi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119103298
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppoi03041
]
119103298
Enzymes [BR:
ppoi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119103298
Spliceosome [BR:
ppoi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
119103298
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
nSTAND3
Dehydrin
AAA_30
SRP54
Cas3-like_C_2
Reprolysin
Motif
Other DBs
NCBI-GeneID:
119103298
NCBI-ProteinID:
XP_037082662
LinkDB
All DBs
Position
Unknown
AA seq
1065 aa
AA seq
DB search
MSLRGWVDDQLHEVLGLSDKYVSQFLIELAQRSGSADQLLDKIRDTGTIDVDERVAAFAR
QLHGRVPRAAAAPPPQRAREAALADVYRRNQQYRLLSDDDEDEEAGAAATTAKPAKRRKH
IRKRKTSSSSDSAPDDRPQGGASGAPQDGATSSEDELEREEKERIKDLAERDAFSERIKK
RDKDKTRKVAEKSDKRGFEEAAKRLRLEAEDRAKAVPKLRVESRRKYLSKRKEDKMTELE
ADIADDEYLFDASQLTERERRERDYKKRVLALAKDHERARELEKVQRYHMPEDVQEEPTK
RYTEVDARERVPNSEQKKWEEEKLQTAQYRFGARDAKPKEETKYELVLEDTVEFVQAMKM
PGTLKSSSSEEEDDSDGDGRRKKKKKKKVKVKSQLDVDAERQLSAREKKMKEIEECQRSL
PVFPFRDDLIQAIRDHQVLIIEGETGSGKTTQIPQYLYHAGFCDNNMKIGCTQPRRVAAM
SVASRVAEELGVKLGNEVGYSIRFEDCTSERTRLKYMTDGMLLREFLSEPDLASYSVMII
DEAHERTLHTDVLFGLMKDIARFRKDLKLLISSATLDAEKFAEFFDDAPVFRIPGRRYPV
DIYYTKAPEADYIDACVVTVLQIHVTQPLGDVLVFLTGQEEIETCQELLLERTRRLGSKI
KEMIVLPIYANLPSEMQAKIFEPTPPGARKVILATNIAETSLTIDGIIYVIDPGFSKQNS
YNARTGMESLIVTPVSKASANQRAGRAGRVAAGKCFRLYTAWSFRSELEDNAIPEIQRVN
LGNVVLLLKSLGIDDLLSFDFLDRPPQETLMLALEQLYALGALNHRGELTTLGRRMSELP
VDPQLSKMIIASERYKCSEEIVTIAAMLSVNSSVFYRPKDKAVHADTARKNFFVPGGDHL
VLLNVYEQWAETDFSTQWCYENFIQYRSMKRARDVRDQLASMMERIEVPLVAASKEDNTG
VRKAITAGFFYHTARLTKSGGYQTVKQSQTVHIHPNSCLFEELPRWVIYFELVFTTKEFM
RQIVEIESAWLLEVAPHYYKGKELEDSTNKKMPKGKGKSRSELER
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atgtctctacgcggctgggtggacgaccagctgcacgaggtgctcggcctctcagacaag
tatgtcagccagttcctgatcgagctggcgcagcgcagcggctcggctgaccagctgctg
gacaagatccgtgacacgggcaccatcgacgtcgacgagcgggtggcggcgtttgcgcgt
cagctgcatggtcgcgtgccgcgcgccgccgccgcgccgccgccgcagcgcgcccgcgaa
gcggcgctggccgacgtgtaccgccgcaaccagcagtaccgcctgctctccgacgatgac
gaagacgaggaggcgggtgcggctgccacgacagccaagcccgccaagcgtaggaagcat
atcaggaagcggaagacgtcgtccagctctgactcggctcccgacgatcggccgcagggt
ggcgctagcggcgcgccgcaggatggcgctaccagctccgaagacgagctggagcgtgag
gagaaggagcgcatcaaggatctggccgaacgggacgctttctccgagagaataaaaaaa
cgggacaaggacaagaccaggaaagtcgcagaaaaatcagacaaacgcggcttcgaagag
gccgccaagcggctgcgcctggaggccgaggaccgcgccaaggcggtgcctaagctgcgc
gtcgagtcgcgccgtaagtacctctccaagcgcaaggaggacaagatgacggagctggag
gccgacatcgccgacgacgaatacctgttcgacgcgtcgcagctgaccgagcgcgaacgc
cgcgagcgcgactacaagaagcgcgtgctggcgctggccaaggaccacgagcgggcccgc
gagctggagaaagtgcagcgctaccacatgcccgaggacgtgcaggaggagccgactaaa
cgctacacggaggtggacgcgcgcgagcgggtgcccaactccgagcagaagaagtgggag
gaggagaagctgcagacggcacagtaccggttcggcgcgcgcgacgccaagcccaaggag
gagaccaagtacgaactggtgctggaggatacggtggagtttgtgcaggcgatgaagatg
cccggtacgctgaagagctccagctcggaggaggaggacgacagcgacggcgacggccga
cgcaagaagaagaagaagaagaaagtcaaggtgaagtcgcagctggatgtggacgcggag
cgccagctgtcggcgcgcgagaagaagatgaaagagattgaggagtgccagcgcagcctg
cccgtcttcccgttccgggacgacctgatccaggcgatccgcgaccaccaggtgctgatc
atcgagggcgagacgggcagtggcaagacgacccagattccgcagtacctctaccacgcc
ggcttctgcgacaacaacatgaagatcggctgcacacagccgcgccgcgtggccgccatg
tctgtcgcctcgcgcgtagccgaggagctgggcgtcaagctgggcaacgaggtcggctac
agcatccgcttcgaggactgcacgtccgagcggacgcggctgaagtacatgacggatggc
atgctgttgcgagaattcctctcggagcccgacctggcctcctacagcgtcatgatcatc
gacgaggcgcacgagcgcacgctgcacacggacgtgctgttcggcctgatgaaggacatc
gcgcgcttccgcaaggacctcaagctgctcatctcgtcggccacactcgacgccgagaag
ttcgccgagttctttgacgatgcgccggtattccgcattcccggccggcggtacccggtg
gacatctactacacgaaggcgcccgaggcggactacatcgacgcctgcgtggtgaccgtg
ttgcagatccacgtcacgcagccgttgggcgacgtgctcgtcttcctcaccggtcaggag
gagatcgagacatgccaggagctgctgctcgagcgcacgcgccggctcggctccaagatc
aaggagatgatcgtgctgcccatctacgccaacctgccgtccgagatgcaggccaagatc
ttcgagccgacgccgccgggcgcgcgcaaggtcatcctggccacgaacatagccgaaacg
tcactcaccatcgatggcatcatctacgtcatcgacccgggcttctccaagcagaacagc
tacaacgcccgcaccggcatggagtcgctgatcgtgacgcccgtctcgaaggcgtcggcc
aaccagcgagccggccgcgccggtcgcgtcgccgccggcaagtgcttccgcctctacacg
gcctggtcgttccgcagcgagctggaggacaacgccatccccgagattcagcgcgtcaac
ctgggcaacgtggtgcttctgctcaagtcgctgggcatcgacgacctgctgagcttcgac
ttcctggaccggccgccgcaggagacgctgatgctggcgctggagcagctgtacgcgctg
ggggcgctaaaccaccgcggcgagctgaccacgctcggccggcgcatgtccgagctgcct
gtcgacccgcagctctccaagatgatcatcgcgtccgagcgctacaagtgctcggaggag
atcgtcaccatcgccgccatgctctccgtcaacagctccgtcttctaccgaccgaaggac
aaggccgtgcacgccgacacggcgcgcaagaacttcttcgtgccgggcggcgaccacctg
gtgctgcttaacgtgtacgagcagtgggcggagaccgacttcagcacgcagtggtgttac
gagaacttcatccagtacaggtcgatgaaacgcgcgcgcgacgtacgggaccagctggcc
agcatgatggagcggatcgaggtgccgctggtggcggccagcaaggaggacaacaccggt
gtccgcaaggccattacggccggcttcttctaccacacggcgcggctcaccaagagcggc
ggctaccagacggtcaagcagagtcagacggtgcacatccatcccaactcgtgcctcttc
gaggaactgccgcgctgggtcatctactttgagctggtcttcaccacgaaggagttcatg
cggcagattgtggagatcgagagcgcctggctgctggaggtggcaccgcactactacaag
ggcaaagagctggaggactccactaacaagaaaatgcctaagggcaagggtaagtcgagg
tctgagctggagagatag
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integrated database retrieval system
