Pollicipes pollicipes (gooseneck barnacle): 119106505
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Entry
119106505 CDS
T08250
Name
(RefSeq) 5'-3' exoribonuclease 2-like
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
ppoi
Pollicipes pollicipes (gooseneck barnacle)
Pathway
ppoi03008
Ribosome biogenesis in eukaryotes
ppoi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppoi00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
119106505
09123 Folding, sorting and degradation
03018 RNA degradation
119106505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppoi03021
]
119106505
03019 Messenger RNA biogenesis [BR:
ppoi03019
]
119106505
03009 Ribosome biogenesis [BR:
ppoi03009
]
119106505
03016 Transfer RNA biogenesis [BR:
ppoi03016
]
119106505
Transcription machinery [BR:
ppoi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
119106505
Messenger RNA biogenesis [BR:
ppoi03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
119106505
Ribosome biogenesis [BR:
ppoi03009
]
Eukaryotic type
Pre-60S particles
RNases
119106505
Transfer RNA biogenesis [BR:
ppoi03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
119106505
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC_4
eIF3h_C
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
119106505
NCBI-ProteinID:
XP_037086044
LinkDB
All DBs
Position
Unknown
AA seq
811 aa
AA seq
DB search
MGVPAFFRWLSKKYASVIVDCIQEKPGEVNGVKIPVDISKENPNGIEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEAIDKMMAIVRPRKLLYMAIDGTAPRAKMNQQRSRRFR
ASKETSEKLEEMARIKAELRSKGVEVPPDKPKGEHFDSNCITPGTPFMDRLSKCLCFYVH
DRMNNDPGWRDLKVILSDANVPGEGEHKIMDYIRRQRASPAHDPNTQHVLCGADADLIML
GLATHEPNFTIIREEFKPNQPRPCEICGQIGHEMKECVGNVREKQGEHDEIAMPVVAETQ
YIFVRLNVLREYLERELEMPNLPFQYDFERAIDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNLYKQTVYKTGGFLTSSGRVNLKRVQLIMQDLGEMEDEIFKSRQRREISFRNRNKA
QRRQKRAEQERQHIQSGQFAPQAVGGAVKPVENARKEAYQIRMEQIAAKSEFKPENNRII
DSATAAGQKRSHDSDSEEETPDEVRLWEDGFKDRYYESKFDVMADNIEFRHQLAREYVLG
LCWVLRYYYQGCASWKWYFPYHYAPFASDFINIGDMRPTFTLAAPFKPLEQLMSVFPAAS
RSHVPEPWGELMMDPHSPIIDFYPVDFKIDLNGKKFAWQGVALLPFVSEVRLKAALESVY
HLLTDDERRRNVRGDDRLFIRNGHAGFEVVHQMYAESTETLEANPELFQKMSGALMPADD
LVEQGADVVSPVPLIKSLRNNQVVTCRYKDPQFPQSFVFPAVKLPGATSPPRVLKPQDLD
RAASRRWRPQIGMVRSNTVASLGRAGHRMVG
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccagcattcttccgatggttatctaagaagtatgcatcagtcattgttgac
tgtattcaagagaagcctggcgaagtcaacggggtcaagatccctgttgacatcagcaaa
gagaatcctaatggcatcgagtttgacaacctgtaccttgacatgaatggcatcatccat
ccttgcactcatccagaggacaagcccgcgcccaagaacgaggatgagatgatggtggcc
atcttcgaggccatcgataagatgatggcgatcgtgcggccccgcaagctgctctacatg
gccattgacgggacggcgccgcgcgccaagatgaaccagcagcgctcgcgtcgcttccgc
gccagcaaggagaccagcgagaagttggaggagatggcgcgcatcaaggccgagctacgc
agcaagggggtcgaggtgccgcccgacaagcccaagggcgagcacttcgacagcaactgc
atcacgccgggcacgcccttcatggaccggctgagcaagtgcctgtgcttttacgtgcac
gaccggatgaacaacgaccccggctggcgcgacctgaaggtgatcctgtccgacgccaac
gtgcccggcgagggggagcacaagatcatggactacatccgccggcagagagcgagtccg
gcgcacgacccgaacacccagcacgtgctgtgcggcgccgacgccgacctcatcatgctg
ggcctggccacgcacgagccgaacttcaccatcatccgcgaggagttcaagccgaaccag
ccgcggccctgcgagatctgtggacagatcggccacgagatgaaggagtgcgtgggcaac
gtgcgcgagaagcagggcgaacacgacgagatcgccatgccggtggtggccgagacccag
tacatcttcgtgcggctgaacgtgctgcgcgagtacctggagcgcgagctggagatgccc
aaccttccctttcagtacgacttcgagcgcgccatcgacgactgggtcttcatgtgcttc
ttcgtcggcaacgacttcctgccgcacctgccgtcgctggagatccgcgagggcgccatc
gaccggctggtcaacctctacaagcagaccgtctacaagaccgggggtttcctcaccagt
agcggccgggtgaacctgaagcgcgtgcagctgatcatgcaggacctgggcgagatggag
gacgagatcttcaagtcccgccagcggcgcgagatctcgttccgcaaccgcaacaaggcg
cagcgccgccagaagcgggccgagcaggagcgccagcacatacagagcggccagttcgcg
ccacaggcggtgggtggcgcggtgaagccggtggagaacgctcgcaaggaggcctaccag
atccgcatggagcagatcgcggccaagtccgagttcaagccggagaacaacaggatcatc
gacagtgcgacggccgccggccagaagcgctcgcacgactcggacagcgaggaggagacg
ccggatgaggtgcggctctgggaggacggcttcaaggacaggtactacgagtccaagttc
gacgtcatggccgacaacatcgagttccgccaccagctggcgcgcgagtacgtgctcggt
ctctgctgggtgctgcgctactactaccagggctgcgcctcctggaagtggtacttcccg
taccactacgcgccgttcgcctccgacttcatcaacatcggcgacatgcggccgacgttc
acgctcgcggcgccgttcaagccgctggagcagctgatgagtgtgttcccggcggccagc
cggtcgcacgtgcccgagccctggggcgagctgatgatggacccgcactcgcccatcatc
gacttctacccggtggacttcaagatcgacctgaacggcaagaagttcgcgtggcagggc
gtggcgctgctgccgttcgtgtcggaggtgcggctgaaggcggccctcgagtccgtctac
cacctgctcaccgacgacgagcggcgccgaaacgtgcgcggcgacgaccgactcttcatc
cgcaacggccacgccggcttcgaggtggtccaccagatgtacgccgaaagcacggagacg
ctggaggccaacccggagctgttccagaagatgtcgggcgcgctgatgccggccgacgac
ctggtggagcagggcgccgacgtcgtctcgcccgtgccgctcatcaagagcctccgcaac
aaccaggtggtgacgtgccgctacaaggacccgcagtttccgcagagcttcgtgttcccg
gccgtcaaactgcccggcgccacgtcgccgccgcgcgtcctgaagccgcaggacctggac
cgggcggcgtcgcgccgctggcggccccagatcggcatggtgcgctccaacacggtggcc
tcgctgggccgcgccggacaccgcatggtcgggtga
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