Pollicipes pollicipes (gooseneck barnacle): 119108625
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Entry
119108625 CDS
T08250
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ppoi
Pollicipes pollicipes (gooseneck barnacle)
Brite
KEGG Orthology (KO) [BR:
ppoi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppoi03016
]
119108625
Enzymes [BR:
ppoi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
119108625
Transfer RNA biogenesis [BR:
ppoi03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
119108625
Prokaryotic type
tRNA splicing ligases
119108625
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
119108625
NCBI-ProteinID:
XP_037088120
LinkDB
All DBs
Position
Unknown
AA seq
506 aa
AA seq
DB search
MVVRSYDEELKYLERLTPHSWRIKKGFQPNMNVEGVFYVNAPLERLMLDELRNSCRAGAV
GGFLPGVKQIANVAALPGIVGRSVGLPDVHAGYGFAIGNMAAFDMSNPASVVSPGGVGFD
INCGVRLLRTNLNYKDVQPVQEQLAQSMFDHIPVGVGSKGIIPMNAQDLEEALEMGMDWS
LRQGYVWAEDKEHCEEYGRMLNADPTKVSTRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
PWAASKMGVEFKGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIATNDRQLACARIS
SKEGQDYLKGMSCAANFAWVNRSSMTFLCRQAFAKQFNMAPDDLDMHVIYDVSHNIAKVE
EHFIDGKQKTLLVHRKGSTRAFPPHHPMIPVDYQLTGQPVLIGGTMGTCSYVLTGTERGM
LETFGSTCHGAGRAMSRAKSRRNLEYQQVLAKMNEMGISVRVASPKLVMEEAPESYKNVT
DVVDTCHAAGISKKCIKLRPVAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggtggtccggtcgtatgacgaggagctcaaatacctggagcgcctgacgccgcacagc
tggcgcatcaagaagggcttccagcccaacatgaacgtcgaaggcgtgttctacgtgaac
gcgccgctggagcggctcatgctggacgagctgcgcaactcgtgccgcgccggcgctgtc
ggcggcttcctgcccggcgtcaaacagatcgccaacgtggcggcgctgcccggcattgtc
ggccgctccgtcggcctgccggacgtacacgccggctacggcttcgccatcggcaacatg
gcggcgttcgacatgtccaaccccgcgtcggtggtgtcgcccggcggcgtcggcttcgac
atcaactgcggcgtccgcctgctgcgcaccaacctcaactacaaggacgtgcagcccgtc
caggagcagctggcgcagagcatgtttgaccacatcccggtgggcgtcggcagcaagggc
atcatcccgatgaacgcccaggacctggaggaagcgctcgagatgggcatggactggtcc
cttcggcagggctacgtttgggcggaggacaaggagcactgcgaggagtacggaaggatg
ttgaacgcggacccgaccaaagtcagcacgcgagccaagaagcgaggccttcctcagctg
ggcacgctgggcgccggaaaccactacgccgagatccaggtggtggacgagatctacgac
ccgtgggcggccagcaagatgggcgtcgagttcaagggccaggtgtgcgtgatgatccac
agcggcagccgcgggttcggtcaccaggtggctaccgacgccctggtgcagatggagaag
gcgatgaagcgcgacaacatcgccaccaatgaccggcagctggcgtgcgcgcgcatcagc
tccaaggagggccaggactacctgaagggcatgtcgtgcgccgccaacttcgcctgggtc
aaccgcagctccatgaccttcctctgccgccaggcgttcgccaagcagttcaacatggcg
cctgacgaccttgacatgcacgtgatctacgacgtctcccacaacatcgccaaggtggag
gaacacttcatcgacggcaaacaaaaaacgcttctagtgcacagaaagggctcgacgcgg
gcgttccctccgcaccacccgatgatcccggtggactaccagctgaccgggcagccggtg
ctcatcggcggcaccatgggcacctgcagctacgtgctcaccggcaccgagcggggcatg
ctcgagacgttcgggtcgacctgtcacggggcggggcgagccatgtcgcgggccaagtcg
cgccgcaacctagagtaccagcaggtgctggccaaaatgaacgagatgggcatctctgtg
cgcgtggcctcgcccaagctggtgatggaggaggcgccagagtcctacaagaacgtgacg
gacgtggtggacacgtgccacgcggccggcatcagcaagaagtgcatcaagctgaggccg
gtggccgttatcaagggctga
DBGET
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