Pollicipes pollicipes (gooseneck barnacle): 119109954
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Entry
119109954 CDS
T08250
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 13D-like
KO
K19527
vacuolar protein sorting-associated protein 13D
Organism
ppoi
Pollicipes pollicipes (gooseneck barnacle)
Brite
KEGG Orthology (KO) [BR:
ppoi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ppoi04131
]
119109954
Membrane trafficking [BR:
ppoi04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
119109954
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS13_VAB
VPS13_M
UBA_7
UBA
Motif
Other DBs
NCBI-GeneID:
119109954
NCBI-ProteinID:
XP_037089594
LinkDB
All DBs
Position
Unknown
AA seq
3003 aa
AA seq
DB search
MSLALQSRGRAVAELQVCGARGQLSRRRRRLALSLSVHSLLLVDALQTYGPDFEILVASH
RSVTVDSVSGSLLDSEPCSPCSPGSPEPLGRPASPVSLTRAINQRLQTAAAIRVASASPP
AGASPPPEQPVGHAQDALITLDVSIVLPSTGQHPSHTLQTVSVRFNTLDVIANQETIVEL
AGFLNRISLPRETPADSPPVPTETQPETEDGCGRTPEDRARTDSPPASPPSSRTELTFDF
HKLNVLLLRSVRIRHGSVTGRKVATATVSGARIQATLAAQLCVSGALGGLQVRDLSPGGH
RHPCVLSVGFDPVVEQSQDLLRRLNADLYRDSEQCPRALEFTACRPAGADQTAQLQVRLA
SVCYTHRAPFLAELGDCVDEFEQYITELARSVGLAAAEMAREMVHIRADPSGSGGDTGAQ
SPPRPDAAPPPDAGHAFSDLDLSVVLETPIVVVPESVGGSRVLVAHLGRIALASRPGDQQ
RLDVRDMNLYSLDLDRVLRARDLSPRRAFTVLRADELYDARLCGDPILYDTALEVDGQFV
TPVRLSVLKSQYEQILRTLDQLTVPPVDEDTEPEPGLPAHGPGSTAAGADDSSAEAPPER
KISVPAQNQVIPIHGSFQLSEFEMELRSDMGGGEARGLVTLTFSDLAVAYERLQPDLTSL
QVTLQEVTMEDLLQPPDAPHRYLMASHNTPSERRLSSVSAFLSTSCPDIAAASADSALIQ
CTATLRGARAAVARTVDVNFNCLDVVVSPQSWVMVLDFFGGPPQPDTAGHLGALALVDLT
RHGALYRERFVTSGPEAVHFDLVRYQAPDPGLQRPFDLQLRLHMASVLYVHTQRFLTELL
QFCAHFTQLQELLSRLQAGSDVELSSRGSRVSLDVQAGAPVLLLPLSARSPHLLVADLGR
LRVTNAFVFSGAEPPDSAARDIPFSRRAAPRGRISPVLKGGRERPASPDAVPCLLDVMEV
TLSDMDVYSRAPTDLQLGSYLVRPASGGRLLKQKAGLSLLVERNLDAALNHDVPDMSVRG
SLSTLSLSVDLPQYRLIRGLLDHNLGEPVELEPATLIQPHHVQVTAPDSVWLTMSVRLDL
ENVSLELVSGDAPLARVDFIRSQLLYESFSDASKDVDLMSREIRLYDARFTDFPANKRSN
VFSLILQPLFVKTERSLQAELHYRASAEHAQFTVLLNSMRLMGVLDWWREVNEFISASPE
GGFGPAQAAPTAPAPNAGMAVSAGVVTRRAAVLGQPQQSLELKLNVSDCELVLVENPTLS
DSAAVILKATACVQYRPQSREKPLSCELQNCELFSCLLGGAEQETALSIVDPATVNVEVS
GKLPADAARGILDATDTELHCHMEVLVQQLNVRVSYHDMKMFAAILESLPRQTAGLEGHR
SPQPVNMQAPLLQLRQLGFSEADCGRALVASQGRLDEAAIWLTQHASPSTEAPGTDPPAP
SQPLFDLRGVKLHTSSFSICIIDDCGDADVPLAELCMNHLSVSHSRDGSGEAACELSGDY
YNRALSGWEPFLEPFKCELDWRHSALVQSGAPGGRRTAVVRSRQQANLNLTSTLLELYSM
VRANWTEDYYNRHRVGGPRVASRRRSPFVPFSLKNDTGSRLRFRTVLTSFSGGADAATPA
GGGQGGWTDVEVDQTLPFTFGGRGKLRHQDTHTTRQHQLLVWVEGWQPTAPVSVDRVGVY
FRLTSPVPGRHPTGVRRAAPAPPGFIPSLTRRRHAVRQQCFSKTSDGVMCAVNVELMFRR
FVPAPARVVFAVTLLGAARKLVTVRSALLISNRLPDPVEVKMESSSQRLGEPALQVAAGA
RRPVPLALVHAAQTARPVARPDGWSLCRCRSWQLASHVYRFCVSVDPDNYPSEEAVPCPR
QPVPGRAMPGIQPGHTVSLLPPVTVVNLLPCELRFSCTGTDGTHRIEPGRQVDLEQDLLL
TLSETGEQAEAAGQEADHERARSVSPLLFSLSDPEAPAMMVARLGRGQHVDGVPRWCHHF
HLQPDLHVRRLRVAQRDSRRPDWVYVVGIEIRPGRGRYSDTNIITISPRFQIDNRSTHQL
LFSQLHFADSFMDRSAERTWLRAMPRSQMAFHWPRHDCDHLLCVKLADVPDCHWSGGFLI
DRTDSCHVNIRDKDSQSRFLRLEVVLQVATFYVVFMDADAMPPPFRVDNFSEVNVTFYQS
GTQDHHLRSTVRPRSSVPYAWDQPLAKSLQLTVVAPGGQADAFDMNQLNQRKPLRYDNFM
FIAFAGTFGGPSGAAFDPQNVECRQLVLDVVDGNVVLKRKEPGVRSQLWRHLSSGHVVHE
GSSPPRDPRHPDLDTDRLMVLDIATPAIQPYERVPLRLRRLDRRRRLTQSWRFTDDGRLC
CQHPNLYVQAQDGFAGLRRGSQAVLGPVPSAGLAASAAVPPEQAIQPQMQWPGSGQLSVR
IVTDGPTRVLQLTDAQAKAWVVVGENNASRLLAADDSPEERPPCQTELTVSLQLPAGLGV
SLVSSSPPAELLFVYLGDIAAEYRRTAARHALATSAATCRPSAFAAHAVPSACQRVQIFE
HLVVSVKDLTVTLEERLLYHLLHFIGYSDDASEVNQLEESDLETQRALKAATSSHNTRYY
CRRLELALKKVRLSVLTSARLRPELAATRDKLGRRLVQFEGAQVELDPFVRCHPFETAAK
LIDSVLEHYKAELRSQAAIILGSFDFLGNPLGFFSDVSEGVSGLVMEGDLGALVKNVTHG
VANSTAKVTGSISDAVGWATLDEKHDDKRRRIRSQHTAGSEDHLLAGLKGFGYGLWGGAS
SLVVQPIQGASNEGVWGFLSGIGKGIVGTVTKPAVGFLDLATGAANAVKDTSSSSSRQAP
PRIRPIRVVQGAGGLLPRYSSKDGDGQELLETFTDRRPEERFVAYELLCAGSERLTLDGS
GYAVYPELLSCGDGDLRVLISTEMVRVLSHSRPGVFTLGFAVHFSELEECRPSIERDPAG
GHIYKVVLTVAGSGAGRKHSQPSIKCQDSNVAISITELINFGKSCYEELKHTVPPSKLMS
DQQ
NT seq
9012 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctggcgctgcagtcccgcggccgcgccgtggccgaactccaggtgtgtggcgcg
cgcggacagctgagccgccgccgccgccgcctggcgctcagcctctccgtgcacagcctg
ctgctggtggacgccctgcagacgtacgggcccgacttcgagatcctggtggccagccac
cgcagcgtcaccgtggacagcgtgagcggctcactgttggactcggagccgtgcagtccg
tgcagtcccggctcgccggagcctctcggtcggccggcctcgcccgtctcgctgacgcgc
gccatcaaccagcgactgcagacggccgcggcgatcagagtagcgtcggcgtcgccgccg
gctggagcgtcgccgccgcccgaacagcccgtcggccacgcccaggacgccctcatcacg
ctggacgtgtcgatcgtgctgccatctacaggccagcaccccagccacaccctgcagacc
gtctccgtccgcttcaacaccctggacgtcattgccaaccaggagacgatcgtggagctg
gccggcttcctgaaccggatcagcctgccgcgtgagacgcccgccgactccccgccggtc
cccacggaaacgcagccggagactgaagacgggtgtggacggacgccggaggaccgggcg
cggacagactcgccgccggccagcccgccctccagccgcaccgagctcacgttcgacttc
cacaagctgaatgtgctgctgctgcgctccgtgcggatccggcacggctcggtgacgggc
cgcaaggtggccacggccactgtgagtggcgcgcgcatccaggccacgctggccgcccag
ctgtgcgtgagcggcgcgctgggcggcctgcaggtgcgcgacctcagccccggcggccac
cggcatccgtgcgtcctctcggtcggcttcgaccccgtggtggagcagtcccaggacctg
ctgcggaggctgaacgccgacctgtaccgggacagcgagcagtgtccgcgggcgctggag
ttcaccgcctgccgaccggccggggccgaccagactgcccaacttcaggtccggctggcg
tccgtgtgctacacgcaccgcgccccgttcctggccgagctgggcgactgcgtggacgag
ttcgagcagtacatcaccgagctagcccgctcggtcggcctggccgccgccgagatggcc
cgcgagatggtgcacatcagggcggacccatccggctccggcggcgacacgggcgcgcag
tcaccgccgcggcccgacgcggcgccgccgcccgatgccggccatgccttctccgacctg
gacctgagtgtggtgctggagacgccgatcgtggtggtgccggagagcgtcggcggcagc
cgcgtgctggtggcgcacctgggccgcatcgccctggccagccgacccggcgaccagcag
cggctggacgtgcgcgacatgaacctctactcgctcgacctggaccgcgtgctgcgcgcc
cgcgacctcagcccacggcgggcgttcaccgtgctgcgcgccgacgagctgtacgacgcg
cgcctgtgcggcgacccgatcctgtacgacacggcgctggaggtggacggccagtttgtg
acgccggtgcggctctcggtgctgaagtcgcagtacgagcagatcctgcgcacgctggac
caactgacggtgccgccggtggacgaagacaccgagccggagccgggtctgcccgcgcac
ggccccggctcaacggcggccggtgccgacgacagctcagctgaggcgccgccggagagg
aagatctcggtaccagcgcaaaaccaagtcatacccattcatggctcatttcagctgtcg
gagtttgagatggagctgcgcagcgacatgggtggcggcgaggcgcgcggcctggtgacg
ctcaccttcagtgacctggccgtggcgtacgagcgcctgcagcccgacctgacctcgctc
caggtcaccctgcaggaggtcaccatggaggacctgctgcagccgccggacgcgccgcac
cgctacctcatggcctcgcacaacacgccgagcgagcgccggctgtcatccgtcagcgcc
ttcctgtcgacctcgtgtccggacatcgcggccgcgtcggccgactcggcgctcatccag
tgcacggcgacgctgcgtggcgcgcgcgccgccgtggcacgcaccgtcgacgtcaacttc
aactgcctggacgtggtggtcagcccgcagtcgtgggtcatggtgctggacttcttcggc
ggcccgccgcagcccgacaccgccggccacctgggcgccctggcgctggtcgacctcact
cggcacggtgcgctctaccgcgagcgcttcgtcacgtccggccccgaggctgtacacttc
gacctggtcaggtaccaggcgccagacccgggcctgcagcggccgttcgacctccagctg
cgcctgcacatggcgtccgtgctgtacgtgcacacgcagcgcttcctgaccgagctgctc
cagttctgcgcacacttcactcagctgcaggagctgctcagccggctgcaggcaggctcg
gacgtggaactgagctcgcgcggcagccgggtgtcgctggacgtgcaggccggcgcgccg
gtgctgctgctgccgctctcggctcgctcgccccacctgctggtggccgacctgggccgg
ctgcgcgtcacaaacgccttcgtcttctcgggcgccgagccgccggacagcgcggcgcgc
gacatcccgttctcgcgcagggcggcgccgcgcggccgcatctcgccggtgctgaaggga
ggccgggagcggccggcctctccggacgccgtgccctgcctgctggacgtcatggaggtg
acgctctccgacatggacgtgtactcgcgcgcgccgaccgacctccagctaggctcgtac
ctggtgcggccggcgtccggcggccgcctgctgaaacagaaggccggcctcagtctgctg
gtggagcgcaacctggacgccgccctcaaccacgacgtgccggacatgagcgtgcgcggc
agcctttcgacgctgagcctgtcggtggacctgccccagtaccgtctgatccgcggcttg
ctcgaccacaacctgggcgagccggtggagctcgagccggccacgctcattcaaccgcat
cacgtccaggtgacagcacccgactcggtttggctcaccatgtcggtgcgactggacctg
gagaacgtctctctggagctggtgtcaggcgacgcccctctggcccgggtcgacttcatc
cgctcccagctgctctacgagagcttttcggacgcttccaaggacgtggacctgatgtcg
cgcgagattcgactgtacgacgccaggttcacagacttcccggccaacaagcgctccaac
gtgttcagcctgatcctgcagccgctgtttgtcaagacggagcgtagcctgcaggcggag
ctgcactaccgcgcctcggccgagcacgcccagttcaccgtgctgctcaacagcatgcga
ctgatgggtgtgctggactggtggcgtgaggtaaacgagttcatcagcgccagtccggag
ggcggcttcggcccggcgcaggccgcccccaccgccccggccccgaacgccggcatggca
gtgagcgcaggtgtggtgacgcggcgagcggccgtgctcggtcagccgcagcagagcctc
gagctcaagctcaacgtctccgactgcgagctggtgctggtcgagaaccccacactctcc
gactcagcggccgtcattctcaaggcgacggcgtgcgtgcagtaccggccgcagagccgc
gagaagccgctgagctgcgagctgcagaactgcgagctcttcagctgcctgctgggcggc
gccgagcaggagacggcgctctccatcgtcgacccggccaccgtgaacgtcgaggtgtcg
ggaaagctgccggccgacgccgccaggggcatcctggacgccacggacaccgagctgcac
tgccacatggaggtgctggtacagcagctgaacgtgcgggtcagctatcacgacatgaag
atgttcgccgccatcctggagagtctgccgcggcagacggccggtctcgaaggccaccgc
tcgccgcagccagtcaacatgcaggcaccgctgctgcagctgcgccagctgggcttctcg
gaggccgactgcggccgggcgctggtcgccagccaggggcggctggacgaggccgccatc
tggctcacccagcacgcgtctcctagcaccgaagcgcctgggacggacccgccggcgccc
agtcagccgctgttcgacctgcgcggcgtcaagcttcacacatcgtccttctcaatctgc
atcatcgacgactgcggggacgccgacgtgcctctggcggagctgtgcatgaaccacttg
tccgtgtcgcactcgagagatggctctggcgaggcggcgtgcgagctgtcgggagattac
tacaaccgagctctctccggatgggagccattcctggagcccttcaagtgtgagctggac
tggcggcacagcgcgctggtgcagagcggcgcgcccggcggccggcgcaccgccgtggtc
cgctcccggcagcaggccaacctcaacctcacctccaccctgctcgagctgtactcgatg
gtgcgcgccaactggaccgaggactactacaaccggcacagggtgggaggaccgcgcgtg
gccagccggcggcgtagccccttcgtgccgttcagcctgaagaacgacacgggctcgcgg
ctccggttccgcaccgtgctgacctccttcagcggcggcgccgacgcggccacaccggcc
ggcggcggccagggcggctggaccgacgtcgaggtggaccagactctacccttcaccttc
ggcggcagagggaagctgcgtcatcaggacacgcacaccacccgccagcaccagctgctg
gtgtgggtcgagggctggcagcccacggcgcccgtctccgtcgaccgcgtcggcgtgtac
ttccgactcaccagtcccgtgccgggccgccatcccaccggggtcagaagggccgctccc
gcaccacccggctttattccgagcctcaccagacgtcggcacgccgtccgccagcagtgc
tttagcaaaacgagcgatggcgttatgtgtgctgttaatgtagagctaatgtttcgccgt
ttcgttccggcgccggcgcgcgtggtgttcgccgtcacgctgctcggcgccgcccgcaag
ctggtcaccgttcgctcggcgctgctgatcagcaaccggctgcccgacccggtcgaggtc
aagatggagagctcgtcccagcggctcggagagccggcgctgcaggtggcggcgggcgcg
cgccgacccgtgccgctggcgctggtgcacgccgcccagacggcccgacccgtggctcgg
cccgacggctggtcgctgtgccgctgccgcagctggcagctggcctcgcacgtctacagg
ttctgcgtcagcgtcgacccggacaactacccgtcggaggaggcggtgccctgccccaga
cagcccgttccgggccgcgccatgcccgggatccagccgggccacacggtcagcctgctg
ccgcccgtcaccgtggtcaatctgctgccctgcgagctgcgcttctcctgcaccggcacc
gacggcacgcaccgcatcgagcccggccggcaggtggacctggagcaggacctgctgctg
accctgagtgagaccggcgagcaggcggaggcggccggccaggaggccgaccacgagcgc
gcccgctccgtctcgccgctgctcttctcgctcagcgaccccgaggcgccggccatgatg
gtggcgcgcctgggccgcggccagcacgtggacggcgtgccccggtggtgtcaccacttc
cacctgcagccggatctgcacgtgcgccgcctgcgtgtggcgcagcgcgacagccgccgc
cccgactgggtctacgtggtcggtatcgagattcggccgggccggggccgctacagcgac
acgaacatcatcaccatctcgccgcgcttccagatcgacaaccgctccacccaccagctg
ctcttctcgcagctgcacttcgccgactcgttcatggaccgcagcgccgagcgcacgtgg
ctgcgggcgatgccgcgcagccagatggcgttccactggccgcgccacgactgcgaccac
ctgctgtgcgtcaagctggcggacgtgcccgactgccactggtcggggggcttcctcatc
gaccgcaccgacagctgccacgtcaacatcagggacaaggacagccagagccgcttcttg
cggctggaggtggtgctgcaggtggccaccttttacgttgtgttcatggacgccgacgcc
atgccgccgccgttccgcgtagacaacttctccgaggtcaacgtcaccttctaccagagc
ggtactcaggaccaccacctgcggagtacggtgcggccgcgcagctccgtgccgtacgcc
tgggaccagccgctggccaagtcgctgcagctgacggtggtggcacccggcggacaggcc
gacgcgttcgacatgaaccagctgaaccagcggaagccgctgcgctacgacaacttcatg
ttcatcgctttcgccggcaccttcgggggcccgtctggagcggcgttcgacccgcagaac
gtcgagtgccgccagctcgtgctggacgtggtggacggcaacgtggtcctcaagcgcaag
gagccgggcgtgcggtcgcagctgtggcgccacctgtcgtcaggacacgtggtgcacgag
ggcagcagcccgccgcgcgacccgcgtcaccccgacctcgacaccgaccggctgatggtg
ctggacatcgcgacgccggccatccagccgtacgagcgtgtgccgctgcggctgcggcgg
ctggaccggcgccgccgactcacgcagagctggcgcttcaccgacgacggccggctctgc
tgccagcaccctaacctgtacgtgcaggcacaggacggcttcgccggcctgcgcagaggg
agtcaggcggtgctgggcccggtgccgtccgccggcctcgcggcgtcggccgccgtgccg
ccggagcaggctatccagccgcagatgcagtggcccgggtcgggccagctcagcgtccgc
atcgtcaccgacgggcccacccgcgtgctgcagctcacagacgcgcaggctaaggcctgg
gtggtggtgggcgagaacaacgcgtcccggctgctggcggcggacgactctcccgaggag
cggccgccctgccagacggagctgactgtcagtctgcagctaccggcagggctgggcgtc
agcctggtgtcgagctcgccgccggccgagctgctgttcgtctatctgggcgacatcgca
gccgagtaccggcgcacggcggcgcgccacgcgctcgcgacgagcgccgccacctgccgg
ccgtctgctttcgccgcccacgccgtgcccagcgcctgccagcgcgtacagatcttcgag
cacctggtggtgtctgtgaaggacctcactgtgacgttggaagagcgcctgctgtaccac
ctgctacacttcatcggctacagcgacgacgcctcggaggtgaaccagctggaggagtca
gacctcgagacgcagagagcgctgaaggcggccacctcctcccacaacacgcgctactac
tgccggagactggagctggccctaaagaaggtgcgtctgagcgtgctgacctccgcccgg
ctgcggcccgagctggccgccacccgcgacaagctgggtcgccggctggtgcagttcgag
ggcgctcaggtggagctggacccgttcgtgcgctgccacccgttcgagacggccgccaaa
ctcatcgactcggtgctggagcactacaaggcggagctgaggtcgcaggcggccatcatc
ctggggtcgttcgacttcctgggcaacccgctgggcttcttcagcgacgtcagcgagggc
gtgtcgggcctggtgatggagggcgacctgggcgcgctggtcaagaacgtcacacacggc
gtggccaactccacggccaaggttaccggctcgatctcggacgccgtcggctgggcgaca
ctggacgagaagcacgacgacaagcggcgccgcatccgctcccagcacacggcgggctct
gaggatcacctgctggccggcctcaagggcttcggctacggcctttggggcggcgcctcc
tcgctggtcgtgcagcccatacagggcgcctccaacgagggagtctggggatttctgtcc
ggcatcgggaagggcatcgtaggcacagtgaccaagccggctgtcggcttcctcgacctg
gcgacgggcgctgccaacgccgtcaaagacaccagcagcagctcaagccggcaggctccg
ccgcgaatccgtccgatccgcgtggtgcagggggccggcggcctgctgcccaggtacagc
agcaaggacggcgacggccaggagctgctcgaaacgttcacagaccgcaggcccgaggag
aggtttgtggcgtacgaactgctgtgcgccggctccgagcggctgacactggacggctcc
gggtacgccgtctacccggagctgctgagctgcggcgacggcgacctgcgcgtgctcatc
tccaccgagatggtgcgcgtgctctctcacagccggccgggcgtcttcacgctgggcttc
gccgtgcacttcagtgagctggaggagtgtcgtccctcgatcgagcgcgatccggccggc
ggacatatctacaaggtggtgctgaccgtggccgggtccggcgcgggccgcaagcacagc
cagccgtccatcaagtgccaggacagcaacgtggcgatcagcatcacggaactgatcaac
ttcggcaagagctgctacgaagagctgaagcataccgtcccgccgtcaaagctcatgtcc
gaccagcagtga
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