Pollicipes pollicipes (gooseneck barnacle): 119111963
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Entry
119111963 CDS
T08250
Name
(RefSeq) 5'-3' exoribonuclease 2-like
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
ppoi
Pollicipes pollicipes (gooseneck barnacle)
Pathway
ppoi03008
Ribosome biogenesis in eukaryotes
ppoi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppoi00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
119111963
09123 Folding, sorting and degradation
03018 RNA degradation
119111963
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppoi03021
]
119111963
03019 Messenger RNA biogenesis [BR:
ppoi03019
]
119111963
03009 Ribosome biogenesis [BR:
ppoi03009
]
119111963
03016 Transfer RNA biogenesis [BR:
ppoi03016
]
119111963
Transcription machinery [BR:
ppoi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
119111963
Messenger RNA biogenesis [BR:
ppoi03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
119111963
Ribosome biogenesis [BR:
ppoi03009
]
Eukaryotic type
Pre-60S particles
RNases
119111963
Transfer RNA biogenesis [BR:
ppoi03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
119111963
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC_4
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
119111963
NCBI-ProteinID:
XP_037091761
LinkDB
All DBs
Position
Unknown
AA seq
811 aa
AA seq
DB search
MGVPAFFRWLSKKYASVIVDCIQEKPGEVNGVKIPVDISKENPNGIEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEAIDKMMAIVRPRKLLYMAIDGTAPRAKMNQQRSRRFR
ASKETSEKLEEMARIKAELRSKGVEVPPDKPKGEHFDSNCITPGTPFMDRLSKCLCFYVH
DRMNNDPGWRDLKVILSDANVPGEGEHKIMDYIRRQRASPAHDPNTQHVLCGADADLIML
GLATHEPNFTIIREEFKPNQPRPCEICGQIGHEMKECVGNVREKQGEHDEIAMPVVAETQ
YIFVRLNVLREYLERELEMPNLPFQYDFERAIDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNLYKQTVYKTGGFLTSSGRVNLKRVQLIMQDLGEMEDEIFKSRQRREISFRNRNKA
QRRQKRAEQERQHIQSGQFAPQAVGGAVKPVENARKEAYQIRMEQIAAKSEFKPENNRII
DSATAAGQKRSHDSDSEEETPDEVRLWEDGFKDRYYESKFDVMADNIEFRHQLAREYVLG
LCWVLRYYYQGCASWKWYFPYHYAPFASDFINIGDMRPTFTLAAPFKPLEQLMSVFPAAS
RSHVPEPWGELMMDPHSPIIDFYPVDFKIDLNGKKFAWQGVALLPFVSEVRLKAALESVY
HLLTDDERRRNVRGDDRLFIRNGHAGFEVVHQMYAESTETLEANPELFQKMSGALMPADD
LVEQGADVVSPVPLIKSLRNNQVVTCRYKDPQFPQSFVFPAVKLPGATSPPRVLKPQDLD
RAASRRWRPQIGMVRSNTVASLGRAGHRMVG
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccagcattcttccgatggttatctaagaagtatgcatcagtcattgttgac
tgtattcaagagaagcctggcgaagtcaacggggtcaagatccctgttgacatcagcaaa
gagaatcctaatggcatcgagtttgacaacctgtaccttgacatgaatggcatcatccat
ccttgcactcatccagaggacaagcccgcgcccaagaacgaggatgagatgatggtggcc
atcttcgaggccatcgataagatgatggcgatcgtgcggccccgcaagctgctctacatg
gccattgacgggacggcgccgcgtgccaagatgaaccagcagcgctcgcgtcgcttccgc
gccagcaaggagaccagcgagaagttggaggagatggcgcgcatcaaggccgagctgcgc
agcaagggggtcgaggtgccgcccgacaagcccaagggcgagcacttcgacagcaactgc
atcacgccgggcacgcccttcatggaccggctgagcaagtgcctgtgcttttacgtgcac
gaccggatgaacaacgaccccggctggcgcgacctgaaggtgatcctgtccgacgccaac
gtgcccggcgagggagaacacaagatcatggactacatccgccggcagagagcgagtccg
gcgcacgacccgaacacccagcacgtgctgtgcggcgccgacgccgacctcatcatgctg
ggcctggccacgcacgagccgaacttcaccatcatccgcgaggagttcaagccgaaccag
ccgcggccctgcgagatctgtggacagatcggccacgagatgaaggagtgcgtgggcaac
gtgcgcgagaagcagggcgagcacgacgagatcgccatgccggtggtggccgagacccag
tacatcttcgtgcggctgaacgtgctgcgcgagtacctggagcgcgagctggagatgccc
aacctaccctttcagtacgacttcgagcgcgccatcgacgactgggtcttcatgtgcttc
ttcgtcggcaacgacttcctgccgcacctgccgtcgctggagatccgcgagggcgccatc
gaccggctggtcaacctctacaagcagaccgtctacaagaccgggggtttcctcaccagt
agcggccgggtgaacctgaagcgcgtgcagctgatcatgcaggacctgggcgagatggag
gacgagatcttcaagtcccgccagcggcgcgagatctcgttccgcaaccgcaacaaggcg
cagcgccgccagaagcgggccgagcaggagcgccagcacatacagagcggccagttcgcg
ccacaggcggtgggtggcgcggtgaagccggtggagaacgctcgcaaggaggcctaccag
atccgcatggagcagatcgcggccaagtccgagttcaagccggagaacaacaggatcatc
gacagcgcgacggccgccggccagaagcgctcgcacgactcggacagcgaggaggagacg
ccggatgaggtgcggctctgggaggacggcttcaaggacaggtactacgagtccaagttc
gacgtcatggccgacaacatcgagttccgccaccagctggcgcgcgagtacgtgctcggt
ctctgctgggtgctgcgctactactaccagggctgcgcctcctggaagtggtacttcccg
taccactacgcgccgttcgcctccgacttcatcaacatcggcgacatgcggccgacgttc
acgctcgcggcgccgttcaagccgctggagcagctgatgagtgtgttcccggcggccagc
cggtcgcacgtgcccgagccctggggcgagctgatgatggacccgcactcgcccatcatc
gacttctacccggtggacttcaagatcgacctgaacggcaagaagttcgcatggcagggc
gtggcgctgctgccgttcgtgtcggaggtgcggctgaaggcggcgctcgagtccgtctac
cacctgctcaccgacgacgagcggcgccgaaacgtgcgcggcgacgaccgactcttcatc
cgcaacggccacgccggcttcgaggtggtccaccagatgtacgccgaaagcacggagacg
ctggaggccaacccggagctgttccagaagatgtcgggcgcgctgatgccggccgacgac
ctggtggagcagggcgccgacgtcgtctcgcccgtgccgctcatcaagagcctccgcaac
aaccaggtggtgacgtgccgctacaaggacccgcagtttccgcagagcttcgtgttcccg
gccgtcaaactgcccggcgccacgtcgccgccgcgcgtcctgaagccgcaggacctggac
cgggcggcgtcgcgccgctggcggccccagatcggcatggtgcgctccaacacggtggcc
tcgctgggccgcgccggacaccgcatggtcgggtga
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