KEGG   Pollicipes pollicipes (gooseneck barnacle): 119112309
Entry
119112309         CDS       T08250                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4-like
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
ppoi  Pollicipes pollicipes (gooseneck barnacle)
Pathway
ppoi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ppoi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    119112309
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ppoi03041]
    119112309
Spliceosome [BR:ppoi03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    119112309
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st Beta-prop_TEP1_C NBCH_WD40 WDR90_beta-prop_4th PRP4 Beta-prop_EIPR1 Beta-prop_EML Beta-prop_DCAF4 Beta-prop_SCAP Ge1_WD40 Beta-prop_IFT122_1st eIF2A Beta-prop_IFT140_1st WD_LRWD1 WD40_RFWD3 Beta-prop_RIG_2nd WD40_like Beta-prop_WDR75_2nd Beta-prop_SPT8 Beta-prop_WDR19_1st Nbas_N
Other DBs
NCBI-GeneID: 119112309
NCBI-ProteinID: XP_037092324
LinkDB
Position
Unknown
AA seq 511 aa
MSDMSDDDDVIVIPSASTKTVHYGSLEETERARLAKVAEAGGEGSPKPGGPNINTSTDYM
ELEEREMHSDKQALLDEFERRKRARQIHVSTDDGEVKRRLREREQPICLFGEGPADRRNR
LRDLLSRGEEEAPSDQRPAEGPSAPAQTPRTDTWYHEGPPELREARYWIADYSMPRAKQR
LAAARQKLQTPEATRNAERQQLQKRLRALSLHASQVGDTRPVSHCSFAPGGRLLATASWS
GLCKLWTVPDCQPVRTLRGHTCNVGAVAFHPRATVDLEPGDVNLASCGHDGSVKLWSLDS
DEPLADIEGHAPYRVSNLKYHPSGRFVATCCHDHSWRLWDLEQLTEVLHQEGHSGAVYDV
DFHTDGSLVATGGLDAYARLWDLRTGSCIMFMEGHLKGVLAIKFNPNGYIVATGSSDNTC
KVWDLRRRECVYTIPAHTNLVSSLAFEPDQGSFLVTASYDNTAKIWSSDTWQPLHTLKGH
DGKIMGVDVTPDGRCVATSSYDRTFKLWMPE
NT seq 1536 nt   +upstreamnt  +downstreamnt
atgtcagacatgtcagatgatgatgacgtgatcgtcattccgtcggcgagcaccaaaact
gtacactatggctcactggaggagacagagcgggcgcggttggccaaggtggccgaggcc
ggcggcgaaggctcgcccaagcctggcggtcctaacatcaacacgtcaacagactacatg
gagctggaggagcgggagatgcactcggacaagcaggcgctgctggacgagttcgagcgg
cgcaagcgcgcgcgccagatccacgtgtccaccgacgacggcgaggtgaagcgacgtctg
cgcgagcgcgagcagcccatctgcctgttcggcgagggaccggcagatcggcgcaaccgc
ctgcgggacctgctctccaggggtgaggaggaggcgccgtcggaccagaggccggccgag
gggccgtcagcgcccgctcagacgccgcgcactgacacctggtaccacgagggcccaccg
gagctgcgggaggcgcgctactggatcgcagactactcgatgccgcgcgccaagcagcgg
ctggcggccgcccgccagaagctgcagacgcccgaggcgacgcgcaacgccgagcggcag
cagctgcagaagcggctgcgcgcgctcagtctgcacgccagccaggtgggcgacacgcgg
cccgtctcgcactgcagcttcgcgcccggcggccggctgctggccaccgccagctggtcg
ggcctctgcaagctgtggacggtgcccgactgccagccggtgcgcacgctgcgcggccac
acgtgcaacgtgggcgccgtggcgttccacccgcgcgccaccgtcgacctggagccgggc
gacgtgaacctggcctcgtgtggccacgatggcagcgtcaagctctggagtttggacagt
gacgagccgctggccgacatcgagggtcacgcgccgtaccgggtctccaacctcaagtac
cacccgtcgggtcgtttcgtggccacctgctgccacgaccactcgtggcggctctgggac
ctggagcagctgaccgaggtgctccaccaggagggccacagcggcgccgtgtacgacgtc
gacttccacaccgacggcagcctggtggccaccggcggcctggacgcgtacgcccggctc
tgggacctgcgcaccggctcttgcattatgttcatggagggacatctcaagggcgtgctg
gccatcaagttcaaccccaacggctacatcgtggccacgggcagcagcgacaacacatgc
aaggtgtgggacctgcggcggcgcgagtgcgtgtacaccatcccggcacacaccaacctg
gtgtcgagcctcgccttcgagccggaccagggcagcttcctggtcactgcttcctacgac
aatacggccaagatctggtcttcggacacgtggcagcccctgcacacgctcaagggccac
gacggcaagatcatgggcgtggacgtgacgccggacggccggtgcgtggccacctcctcc
tacgaccgcacctttaaactctggatgcccgagtga

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