Pollicipes pollicipes (gooseneck barnacle): 119113038
Help
Entry
119113038 CDS
T08250
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1-like
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
ppoi
Pollicipes pollicipes (gooseneck barnacle)
Pathway
ppoi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppoi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
119113038
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppoi03021
]
119113038
Enzymes [BR:
ppoi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
119113038
Transcription machinery [BR:
ppoi03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
119113038
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
PFF1_TM
Motif
Other DBs
NCBI-GeneID:
119113038
NCBI-ProteinID:
XP_037093253
LinkDB
All DBs
Position
Unknown
AA seq
1684 aa
AA seq
DB search
MGAINEELHFLPSSIGFSVFSADEIRKLSKVEITSTVSVNDLHQPLPGGLYDLRMGPYMR
DFGVCGTCSLNFLHCPGHIGHIELVVPVINPLFRSVALSLLSRTCLNCSALLYPGPVLVL
AGVQLELLDMGLAAEALAAADLVSRAAAAAGGKRRQSEVDVEVDLDQSLPEPGRLQATSR
LLDYFKEVKERHRSGQLVREVRNVVLERRNTVKEFLARRPLKQCPQCSHVQPSLHDYFGQ
IVKIAKTSGGNKSKKDKMEDVVDTRGYLTAVEARDVLRKLWARERELLGRVFGMLNTLKH
QDHPTDCFFLDVLPVTAPRFRPMDSLHGRSVEHTQTYVYSNVLECSRVLRQLMTARKADV
PVEELPAEQRRLVGVARGTTLDDKIMRCWANLQGLIDCVIDPDMSKVIARRLNYKNLRGI
RQVLEKKEGIFRMNMMGKRVDFAGRTVITPDPYLSVEEMGVPEVMAKKLTYPVPVTPQNL
SLLQRAVLNGPNRHPGANAVQMGNGVKVVLRDDQKQLAGIAASLLTPTEEQSRKLIGPKI
VHRHLVSGDVVLLNRQPTLHRPSIMAQRVRVLPGEKTFRLHYSNCKSYNADFDGDEMNMH
LPQGEEARSEAYNLAFSPNHYLVPKDGTPLGGLIQDHVVAGVRLTMRSTFLERAEYQQLV
ASGLGGHRRRVHLLPPAILRPRQLWTGKQVISTILTNLTPPGQPAINLLSAAKLNHKVWQ
RERPRPCLAGGPIVDPDLSEAEVVIRGGHLLCGVLDKQQFGAVPFSLVHGFYELYGGGAG
SRLLSSFSRLFTCCLHVFGFTLGVHDIMVTSEADQERRRIIQQTAEVGPEATADALGLVS
KEERADERAVQRRLEQAHLSGNVRAQRDLDRAYKKRLDTVNNAINRVCLPLGLVQSFPDN
NLQLMVESGAKGSKVNTMQISCLLGQIELEGKRPPRMLSGKTLPSFAPYDLTPRAGGFIA
SRFMTGIRPQEYFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLVVNYDSTVRDSDG
SVIQFRYGEDGCETQKVPYLAAKQLPFFDDNHRGLLDPQLVNDFKRVSSIDAIRKHKKKI
RKWTREFGDPREHRRSSPFLEFSRMTTVDGQGELDPKTGRPRSYHNCLKLWNQLDNDKLF
RTAARRCPDPVDSAYAPDAHFSSVCERLDRLLTEYLESRPGDSDQLRDLLYFKVARAMIQ
PGEAVGLIAGQSVGEPSTQMTLNTFHFAGLGDMNVTLGIPRLREILAASHSMKTPSMEIP
FRQDVAGLEQRARRLKLQMTRVTLAQVLRDVTVTETCRAGHTRTYDLRMEFLPRSSYKGE
LAVTPSSVLRYVEDVWVLRFLKLLAKTFKLKDIGGVLEGKEAQASPEADEEDVEATEDDP
SPAPQAERPAEDEDDQNSDGEAEADDDATAARSKARRNDEADYEEDDEEEEQQEDRPDSD
DTDGDVEEAGPAKTSGGREAATRRAAVLTMCWESCGVKKYEFDQKRERWCQLTVAVSTSR
QCDIQTLVRQAADSAVIREVPKISRVFLLDDKDGLRLHTEGINMPYMARFSDLLDLNKMC
CNDVHSMANAYGIEAAARAIVKEITSVFEVYGIHVSPRHLSLIADYMTFSGAVCGFNRSA
MDSVVSPLQQMSFETTVRFLRTAVLAGQVDELKSPSARLVLGQPFGGGTGMFSLVNQMMA
DYGL
NT seq
5055 nt
NT seq
+upstream
nt +downstream
nt
atgggagcaataaatgaggagctccattttttgccttcctcaatcgggttctccgtgttc
tccgccgatgagatccggaagctgagcaaagtggagatcacatcgacggtcagcgtcaat
gacctccaccagccgctgcccggtggactctacgatctgcgcatggggccctacatgcgc
gacttcggtgtgtgcggcacatgcagcctgaactttctgcactgcccgggccacatcggg
cacattgagctggtggtgccggtgatcaaccccctgttccgctctgtggccctgagcctg
ctctcccgaacgtgtctcaactgctcggccctcctctaccctggcccggtgctggtgctg
gccggggtccagctggagctgctcgacatggggctggcggccgaggcgctggccgccgcc
gacctggtgtcccgggcggcagcggcggccggcggcaagcggcgccagagcgaagtcgac
gtggaggtggacctggaccagtcgctgccggagcccggcaggctgcaggccaccagccgg
ctcctggactacttcaaggaggtcaaagagcggcacagaagcggccagctggtgagggag
gttcgtaacgtcgtgctggagcgacgcaacactgtcaaggagttcctggcgcgccggccg
ctcaaacagtgcccgcagtgcagccacgtgcagccttcgctccacgactacttcggccag
atcgtgaagattgctaagacgtccggcgggaacaagtccaagaaggacaagatggaagac
gtggtcgatacacgcggctacctgacggcagtggaggcgagagacgtgctgcgcaagctg
tgggcacgcgagcgcgagcttctcggccgcgtgttcggcatgctgaacacgctgaagcac
caggaccacccgaccgactgcttcttcctggacgtgctgcccgtgacggcgccgcgcttc
agaccgatggactcgctgcacggtcggtcggtggagcacacgcagacgtacgtctactcg
aacgtgctggagtgcagccgcgtgctgcgccagctgatgacggcgcgcaaggcggacgtg
ccggtggaggagctgccggccgagcagcgccggctggtgggtgtggcgcgcggcaccacg
ctcgacgacaagatcatgcgctgctgggccaacctgcagggcctgatcgactgcgtcatc
gaccccgacatgagcaaagtcatcgcccgccggctcaactacaagaacctgcgtggcatc
cggcaggtgctggagaagaaggagggcatcttccgcatgaacatgatgggcaaacgggtg
gacttcgccgggcgcacggtcatcacgcccgacccgtacctcagcgtcgaggagatgggc
gtgccggaggtgatggccaagaagctgacgtacccggtgccggtgacgccgcagaacctg
tcgctgctgcagcgtgccgtgctcaacggtcccaaccgacacccgggggccaacgccgtc
cagatgggcaacggcgtcaaggtggtgctgcgagacgaccagaagcagctggccggcatc
gccgccagcttgctgacgcccaccgaggagcagtccaggaagctcatcggacccaaaatc
gtacaccggcacctggtgtcgggcgacgtggtgctgctgaaccggcagccgaccctgcat
cggccctccatcatggcgcagcgcgtgcgcgtgctgcccggcgagaagacgttccgcctg
cactactccaactgcaagagctacaacgctgacttcgacggcgacgagatgaacatgcac
ctgccgcagggcgaggaggcgcgcagcgaggcctacaacttggccttctcgccgaaccac
tacctggtgccgaaggacggcacgccgctgggcggcctcatccaggaccacgtggtggcc
ggcgtgcgcctcaccatgcgctccacgttcctggagcgcgccgagtaccagcagctggtg
gccagcggtctgggcggccaccggcggcgtgtgcacctcctaccgcctgccatcctgcgg
ccgcggcagctctggaccggcaagcaggtgatctcgaccatcctgaccaacctgacgccg
cccgggcagccggccatcaacctgctctccgcggccaagctcaaccacaaggtgtggcag
cgggagcggccgcgtccgtgcctcgctggtggccccatcgtcgacccagacctctccgag
gcggaggtggtgatccgcggcggtcacctgctctgcggcgtgctcgacaaacagcagttc
ggcgccgtgcccttctcgctcgtgcacggcttctacgagctgtacggcggcggcgccggc
agccggctgctcagctcgttctcgcgcctcttcacctgctgcctgcacgtgttcggcttt
accctcggcgtgcatgacatcatggtgacgtcagaggccgaccaggaacgacgccgcatc
atccagcagacggctgaggtggggcccgaggcgacagccgacgcactcggcctggtctcc
aaggaagagcgggcggacgagcgggccgtgcagcgtcgtctcgagcaggcgcacctctcc
ggcaacgtgcgcgcccagcgtgaccttgaccgtgcctacaagaagcgcctggacactgtc
aataacgccatcaacagggtgtgcctgccgctgggactggtgcagtcgttcccggacaat
aacctgcagctgatggtggagtccggagcgaagggctctaaggtcaacaccatgcagatc
agctgtctgctgggtcagatcgagctggagggcaagcggccgccgcggatgctgtccggc
aagacgctgcccagcttcgcgccgtacgacctgacgccgcgcgccggcggcttcatcgcc
agcaggttcatgaccggcatccggccgcaggagtacttcttccactgcatggccggcagg
gagggtctgatcgacacggccgtcaagaccagccgctccggctacctgcagcgatgcctc
atcaaacacctggagggcctggtggtcaactacgactcgacggtgcgcgacagcgacggt
agcgtcatccagtttcggtacggcgaggacggctgcgagacgcagaaggtgccgtacttg
gcggccaagcagctgcccttcttcgatgacaaccatcgaggcctgctggatccacagctg
gtgaacgacttcaaacgggtctcgagcatcgacgccatccgcaagcacaagaaaaagatc
cggaagtggacccgggagttcggcgatccgcgggaacaccgccgctccagtccgttcctc
gagttcagccgcatgacgaccgtggacggccagggggagctcgaccccaagacaggccgg
ccgcgcagctaccacaactgcctcaagctgtggaaccagctggacaacgacaaactgttc
cgcacggccgcccgccgctgtccggacccggtggactcggcgtacgcgccggacgcgcac
ttctcgtcggtgtgtgagcgtctcgaccggctgctgaccgagtacctggagtcgcggccg
ggcgactcggaccagctgcgtgacctgctctacttcaaagtcgcccgcgccatgatccag
cccggcgaggcggtcggtctgatcgccggccagtcggtcggagagccgtccacacagatg
accctcaacacgttccacttcgccggcctgggtgacatgaacgtcacgctcggcatcccg
cggctacgtgagatcctggccgcctcccactcgatgaagacgccgagcatggagataccg
ttccggcaggacgtggccgggctggaacagcgcgcgcgccgcctcaagctgcagatgacg
cgcgtcacgctggcccaggtcctgcgtgacgtcaccgtcaccgagacgtgtcgagccggg
cacacgaggacgtacgacctgcggatggagttcctgccgcgctcctcctacaagggcgag
ttggccgtcacaccgagctcggtgctgcggtatgtggaggacgtctgggtgctgcgcttc
ctcaagctgctcgccaaaaccttcaagctcaaggacattggcggcgtgctggagggcaag
gaggcccaggcgtcgccggaggcggacgaggaggatgtggaggcaaccgaggacgacccg
agcccggctccgcaggccgagcggccggccgaggacgaggacgaccaaaactcggacgga
gaggcggaggccgacgacgacgccacagcggcccgctccaaagcgcgccgcaacgacgag
gccgactacgaggaggacgacgaggaggaggagcagcaggaggaccggcccgactcggac
gacacggacggggacgtcgaggaggcggggcccgccaagacgtccggtgggcgggaggcg
gcgacgcgccgggcggccgtgctcaccatgtgctgggagagctgcggcgtcaagaagtac
gaattcgaccagaagcgcgagcgctggtgccagctcaccgtggcggtgtccaccagccgc
cagtgcgacatccagacgctggtgaggcaggcggccgactcggctgtcatccgtgaggtg
cccaagatctcgcgcgtcttcctcctcgacgacaaggacggcctgcgcctccacacggag
ggcatcaacatgccctacatggctcgcttctccgacctgctcgacctcaacaagatgtgc
tgcaacgacgtgcacagcatggccaacgcgtacggcatcgaggcggccgccagagccatc
gtcaaggagatcacgtccgtgttcgaggtgtacggcatccacgtgagtccgcgccacctc
agcctcatcgccgactacatgacgttcagtggcgccgtctgcggcttcaaccggtcggcc
atggactcggtcgtgtcgccgctgcagcagatgagcttcgagaccaccgttcgcttcctg
cgcacggccgtgctcgcaggtcaggtggacgagctgaagtcgccctcggcgcggctggtg
ctgggtcagccgttcggcggcggcaccggcatgttcagcctcgtcaaccagatgatggcg
gactacgggttgtag
DBGET
integrated database retrieval system
