Pollicipes pollicipes (gooseneck barnacle): 119113556
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Entry
119113556 CDS
T08250
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
ppoi
Pollicipes pollicipes (gooseneck barnacle)
Pathway
ppoi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppoi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119113556
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppoi03019
]
119113556
Enzymes [BR:
ppoi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
119113556
Messenger RNA biogenesis [BR:
ppoi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
119113556
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
NCBP3
RRM_Thc1
Motif
Other DBs
NCBI-GeneID:
119113556
NCBI-ProteinID:
XP_037093748
LinkDB
All DBs
Position
Unknown
AA seq
514 aa
AA seq
DB search
MDITKENFATHLPRIRDAISRCSFLAVDCEFSGLTTGGTTCQYDTPAERYAHLRRTAAGF
LVIQFGLAAFTLDQERGRYTQETFNFYLFPRHPSQGSFLCQPSSLEFLSGNGFDFNKLIK
DGVPYLKPAQVETLRDQLERQQEEAASPAAATTTAAAAATASVPDNQTEFLDKAVSQVGE
FLRSSDEHLDFHGLSGYQRKIMYDHVSARVATPLDLETQRTPGGQRTLRVRRAAGPEERR
RRLRERLDEAAGFCQVISAISESGKTVVGHNMLLDLLHMVEQFVCPLPQSYADFRAVVGC
VFPSLVDTKVMGSTQPFRDLIPSTTLGEMVVCLGTHPFTAPTVVAAEGSSGPEYRVGDSK
HHEAGYDAFLTAVCFASMVNYLGLLLTPPKPLLEPSADIVRPFSNKVFVMRMADMPYLNL
TGDDVEPSRDHVFHLTFPAAWKTGDIVQLFSAFSRVHVAWINDTSAFVSLDRRDQASQVL
QNVKAAGLFTLCTYSEWQAAQRMSRPDRATKQKT
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atggacataaccaaggaaaactttgccacccaccttccacgcatacgggatgccatctca
cgttgctccttcctggctgtggactgtgagttcagcgggctgacgacaggtggcaccacc
tgtcaatatgacacgccagctgagcgatatgcccacctgcggcgtacggccgccggcttc
ctcgtcatccagttcgggctggctgccttcacgctggaccaggagcggggcaggtacacg
caggagacgttcaacttttacctgttcccgcgccacccgagccaaggctcgttcctctgc
cagccgtccagcctcgagttcctctcgggcaatggcttcgacttcaacaagctgatcaag
gatggcgtaccgtacctgaagcccgcccaggtggagacgctgcgcgatcagctagagcga
cagcaggaggaagccgcctcgccggccgccgccaccaccaccgctgctgccgccgccact
gccagtgtgcccgacaaccaaaccgagttcctcgacaaggctgtatcgcaggtcggggag
ttcctgcgctcgtccgacgagcacctggacttccacggcctgagcggctaccagcggaag
atcatgtacgaccacgtcagcgccagggtggccacaccgctggatctggagacgcagcgc
acgccgggcggccagcgcacgctgcgtgtgcggcgagccgccggcccggaagagcggcgc
cgccgactgcgcgagcggctggacgaggcggccggcttctgccaggtcatctcggccatc
agcgagtcgggcaagacggtcgtgggccacaacatgctgctggacctgctgcacatggtg
gaacagttcgtctgtccgctgccgcagagctacgccgacttcagggcggtagtcggctgc
gtcttccccagtctggtcgacaccaaggtgatgggctcaacacagccgttccgcgacctc
atcccgtcgaccacgctgggcgagatggtggtctgtctgggaacgcatcccttcaccgcg
cccacggtcgtggcggccgagggcagcagcgggcccgagtaccgcgtgggcgacagcaag
catcacgaggccggctacgacgccttcctcaccgccgtctgcttcgcctcaatggtcaac
tacctgggtctgctgctgacgccgcccaagccgctgctggagcccagcgcggatatcgtg
cgccccttctccaacaaggtgttcgtgatgagaatggccgacatgccgtacctgaacctg
acgggagatgacgtggagcccagccgtgaccacgtgttccatctgaccttcccggccgcc
tggaagacgggcgacatcgtccagctgttcagtgccttcagccgggtgcacgtggcctgg
attaacgacacgtcggcgttcgtctcgctggaccggcgggaccaggcgagccaggtgctg
cagaacgtcaaggcggccggcctcttcacgctctgcacctacagcgagtggcaggcggcg
cagcgaatgtcgcgccccgaccgagccacgaagcagaagacc
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