Paenibacillus polymyxa CR1: X809_03360
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Entry
X809_03360 CDS
T02956
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ppol
Paenibacillus polymyxa CR1
Pathway
ppol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
X809_03360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppol03019
]
X809_03360
Messenger RNA biogenesis [BR:
ppol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
X809_03360
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
dTDP_sugar_isom
Motif
Other DBs
NCBI-ProteinID:
AHC18351
LinkDB
All DBs
Position
724899..726569
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AA seq
556 aa
AA seq
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MHADNRLLIAALGGVNEIGKNMYFIQYDQDIVVIDCGSKFPDENLPGIDLIVPDVTYLLE
NQDKVRALIVTHGHEDHIGGIPYLLKQINMPVYGTKLTIELIKIKLREHNLLRDAELHLI
DADSTVQAGTIQASFFTTVHSIPDCLGVFFQTPEGNVVHTGDFKFDMSPVSGPFPDLHRM
AEIGKKGVKVLLSESTNAERPGFTPSERLVGGHILDAFARAKQQVFISTFASNVNRVQQV
IDAAVETGRKLVLLGRSMINVVSVAKELGFLHMPEDLLIEAGETERFPAEEIAILCTGSQ
GEPMAALSRLANSLHPRIEILPGDTVIIAAGAIPGNERNLSQVIDNLYVLGANVIYGSGS
TTGMHVSGHGSQEELKLMMTLMKPEYLIPIHGEFRMLYQHRQLAESVGIPMENVFIVHNG
DTVQIEEGRASLGPKVSAGNSLVDGLVTGDVGNIVLRDRKKLSSDGMLIIVMTLSKNEKQ
MLATPEVISRGFVYVKDSEELMSQIHDTIMSTVNELTEIEMSQWGLIKQMLKDDVGRFIY
SQTKRRPMILPIIIEV
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgcatgctgataatagattactcattgctgctctaggcggtgttaatgaaatcgggaaa
aacatgtattttatccaatacgatcaggatattgtcgttatcgattgtggttccaagttt
cctgatgagaacttgcctggtattgacctcattgtgccggatgtcacctatctgctggaa
aatcaggataaagtcagagcgctcattgtgactcatgggcatgaggatcacatcggaggt
attccctatctgctgaagcagattaatatgcccgtttatggaacaaagctcaccatcgaa
ttaattaaaattaagttaagggagcacaaccttttacgtgatgctgagcttcatcttata
gatgcggattcaaccgttcaagcgggaacgattcaggcatcctttttcactaccgtccac
agtatcccggattgcctgggtgtcttttttcagacaccggaaggaaatgtggtccatacc
ggggatttcaaattcgatatgtctcccgttagtggacctttccccgatcttcatcgcatg
gctgaaataggaaagaagggggtaaaagtgctgctctccgaaagtacaaatgccgaaagg
ccaggatttactccttcagagcgtttggttggcggacatattttggatgctttcgccaga
gccaaacagcaagtatttatttctacgtttgcatccaatgtgaaccgtgtccaacaagtc
attgacgcggctgtagaaacaggcagaaaactcgttctactgggtcgcagcatgataaat
gtggtgtcagtggctaaggagctgggtttcttgcacatgcctgaggacttgttgattgag
gcgggagaaacagaacggtttcctgcagaagaaattgctattttatgtacaggaagtcag
ggtgagccaatggctgcactgtcccgtctagccaattccctgcatcccagaatcgaaatt
ttgcctggtgatactgtaattattgctgcaggagccatacccgggaatgaacggaatctt
tcccaggtcattgataacctgtacgtactgggcgccaacgttatttatggatcaggcagt
accacagggatgcacgtgtccggtcatggcagccaggaagaattaaaattaatgatgacc
ctgatgaaacctgagtatttgattcccatacacggtgaattcaggatgttgtatcagcat
cgtcagctagcggagtctgtagggattccgatggagaatgtatttatcgtccataacggt
gacactgttcaaatcgaagagggaagggcatctctggggcccaaagtatcagccggcaat
agtttggtagacggattggtgacaggggacgtaggtaatattgtactgcgagaccgtaaa
aagctttcatcagacggaatgctgattattgtgatgacgttgagtaaaaacgagaagcaa
atgctcgcaacaccagaggtcatatcaagagggtttgtatatgttaaggattccgaagag
ctcatgagtcagatccacgacacgattatgtccacagtgaacgagttaacagaaatcgaa
atgagtcagtggggactgattaagcagatgttaaaagatgatgttggccggtttatttac
agtcagacgaagagaagacccatgattttacctatcattattgaggtttaa
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