Paenibacillus polymyxa CR1: X809_09235
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Entry
X809_09235 CDS
T02956
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ppol
Paenibacillus polymyxa CR1
Pathway
ppol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
X809_09235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppol03019
]
X809_09235
03009 Ribosome biogenesis [BR:
ppol03009
]
X809_09235
Enzymes [BR:
ppol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
X809_09235
Messenger RNA biogenesis [BR:
ppol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
X809_09235
Ribosome biogenesis [BR:
ppol03009
]
Prokaryotic type
rRNA helicases
X809_09235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_RecD
CMS1
AAA_30
AAA_22
Flavi_DEAD
GRP
Motif
Other DBs
NCBI-ProteinID:
AHC19395
LinkDB
All DBs
Position
1970575..1972164
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AA seq
529 aa
AA seq
DB search
MTTFAEFDLEPKVIQAITELGFEEATPIQSQSIPIALQGRDMIGQAQTGTGKTAAFGIPL
INKISRSDEKIRALIMAPTRELAIQVAEEIEKLSRFKGLRTLPIYGGQDIVRQIRALKKK
PQIIIGTPGRLLDHINRKTIKLEDVNTVVLDEADEMLDMGFMEDIQSILKQVPDERQTML
FSATMPPNIKRLAEQFLKNPEHVSVIPKQVSAPLIDQAYIEVPERQKFEALSRLIDMESP
ELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATDVA
ARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGEAWSFVTPREIDHLHFIERVTR
HRIPRKPLPTLAEALEGKQRIIAERLLEAVESGELNEYKGLAIQMLEQYDSVQLLSAALK
LMTGEKREASIELTPEDPIRAKRRKPDVRSGGRKPSNYSGRSNGGYNSNRSGGTGGSGSK
GGYGGYNRGKEGGGYNRDSGSRYSGDRKPRPSSNGETRRPARREDSSSE
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
ttgacgacatttgcagaatttgatcttgaaccgaaagtaattcaggcgattacagaactg
ggttttgaagaagcaacaccaattcaatcccaatccatcccgattgcactgcaaggcaga
gacatgattggccaagcccaaacaggtactggtaaaactgctgcgtttggtattccgctg
atcaacaaaatttctagaagcgacgaaaaaatcagagccctgatcatggcaccaacacgt
gagcttgctatccaggtagctgaagaaatcgaaaaactctcccgtttcaaaggtcttcgt
actttgccaatctatggtggacaagatatcgtacgccagattcgtgctttgaaaaagaaa
cctcaaattattattggtacgccaggacgcttgcttgaccatattaatcgcaaaaccatc
aagctggaagatgtaaacacagttgttttggatgaagcagatgaaatgttggatatgggc
ttcatggaagatattcaatccattctgaagcaagttccagacgagcgccaaacgatgctt
ttctcggctacaatgcctcctaatattaaaagattggctgagcaattcctcaaaaatcct
gagcatgtttcagttattcctaaacaagttagtgctccactgattgatcaggcctatatc
gaagttcctgagcgtcaaaaattcgaagcattgagccgtttgatcgacatggaatcccca
gaacttgctatcgtatttgggcgtactaagcgtcgggtagacgagctggctgaagctctg
caaaaacgcggatattctgcagacggtttgcatggtgacttgtctcaaaaccaacgtgat
gctgtaatgcgtaaattccgtgacggaagcatcgatgtgctcgtagcgactgacgtagct
gcccgtggtttggacgtttccggcgtaactcacgttgtgaactttgaccttccgcaagat
ccagaaagctatgttcaccgtattggacgtactggacgtgcaggtaaagaaggggaagct
tggtctttcgtaacgcctcgtgaaattgaccatttgcactttatcgaacgtgtaactcgt
caccgcattccacgcaagccgcttccaacgttggctgaagctctggaaggcaaacaacgt
atcattgctgaacgtctcctagaggctgtagaaagcggtgagctgaacgagtacaaaggt
ttggctattcaaatgctggagcaatatgattctgtacaacttctctccgcagctctgaaa
ctgatgactggtgagaaaagagaagcatcgattgagttgactccagaagatccgatccgt
gcaaaacgtcgtaaaccagacgtgcgttctggcggtcgcaagccttccaactatagcggt
cgcagcaatggtggttacaattccaaccgttctggcggtaccggcggtagtggaagtaaa
ggtggatatggcggttacaaccgtggcaaagaaggcggtggctacaaccgtgattcagga
agccgctacagtggagatcgtaaaccacgcccgagcagcaatggagaaactcgtcgtcct
gcaagacgtgaagattcctcttccgaataa
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