Paenibacillus polymyxa CR1: X809_10595
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Entry
X809_10595 CDS
T02956
Name
(GenBank) ribonuclease
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
ppol
Paenibacillus polymyxa CR1
Pathway
ppol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
X809_10595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppol03019
]
X809_10595
Messenger RNA biogenesis [BR:
ppol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
X809_10595
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
KH_KhpA-B
HDOD
KH_2
Motif
Other DBs
NCBI-ProteinID:
AHC19661
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Position
2259338..2260882
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AA seq
514 aa
AA seq
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MMTAIWFVLVAVAALFFGFGIGYFIRKSIAEAKISSAEEAAAQIVENAKKEAEALKKETV
LEAKDEIHRIRAEAEKETRERRNEIQRQERRLLQKEESLDKKLESLERKEEQVANKEKRI
DETQQQIDLIYKSQVTELERISNLTMEDARSIILTNVEQEVRHETAQMIKEIEQQAKEEA
DKKSREIITLAIQRCAADHVAETTVSVVTLPNEEMKGRIIGREGRNIRALETLTGIDLII
DDTPEAVILSGFDPIRREIARTALEKLVADGRIHPARIEEMVEKSRKEVDERIREYGEQA
TFEVGVHSLHPDLIKILGRLKFRTSYGQNVLKHSMEVAYLTGLMAGELGEDVVLARRAGL
LHDIGKALDHEVEGSHVEIGVELAKKYKEHPVVINSIASHHGDCEATSVIAMLVGAADAL
SAARPGARRETLETYIRRLEKLERISESFEGVEKSYAIQAGREVRVMVQPEKIDDAEAFR
LARDITKTIENELDYPGHIKVTVIRETRAVEYAK
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgatgactgcgatctggttcgttctcgttgctgtagccgcgttattctttgggttcggg
attggttattttattcgcaaatctattgcagaagctaagatctccagtgcggaagaagct
gccgcgcaaatcgtggagaacgcgaaaaaagaggcagaagcgctgaagaaggaaacggta
ttggaagcaaaagatgaaatccaccgcatccgtgccgaagctgaaaaagaaactcgtgaa
cgtcgcaatgaaattcaacgacaggaacgaagattgctgcaaaaagaagaatcgctggat
aaaaaattggaatcgctggaacgcaaagaagaacaagtggccaacaaagagaaacgaatc
gatgaaacccagcagcaaattgatttgatttacaagagtcaggtaactgagttggaacgt
atttccaatctgacgatggaggatgcaagaagtattattctgaccaacgtagagcaggaa
gttcgtcatgaaacagctcagatgattaaagaaattgaacagcaggccaaagaagaagcg
gacaaaaagtctcgtgaaatcatcacactggccatccaacgctgtgcggcagatcatgta
gcagaaacgacggtttctgttgtcacattgccgaacgaagaaatgaaaggccggatcatc
gggcgcgaaggccgtaatatccgtgcacttgaaacccttacaggaattgacctcattatt
gatgatacgccggaagctgttattttgtctggatttgatccgattcgtagagagattgcg
cgtactgcgcttgaaaagctcgtagcggacggacggatacatccggctcgtattgaagag
atggtggaaaaatcccgtaaagaggtggacgaacgaatccgtgagtatggtgaacaggcc
acctttgaggtgggcgtgcatagcttgcatccagatttgatcaagatcttgggacgtctc
aagttccgtacaagttacggacagaacgtattgaagcactcgatggaagttgcatacttg
acaggtctgatggccggggaactgggcgaagacgttgtactggcaagacgggcaggattg
ctgcatgacatcgggaaggcgctggatcatgaagtggaaggatcgcacgttgaaattggc
gtggagctggcgaagaagtacaaggaacacccggtcgtcatcaacagcattgcctcacat
cacggcgactgcgaagcgacttcagtgatcgccatgctggttggggcggcagatgccctg
tcagcagcaagaccgggagcgcggcgtgaaacgctagagacgtacatccgtcgtcttgag
aagctggaacgcatctccgaatcttttgaaggcgttgaaaaatcatacgcgattcaagcc
ggacgcgaagttcgtgtcatggtacagccagagaaaattgatgatgcggaagcattccga
ctggcccgcgatattacgaaaacgattgagaatgaactggactatccgggacatatcaag
gttaccgtcatacgcgagacccgtgcggtagaatacgcaaaataa
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