Paenibacillus polymyxa CR1: X809_30085
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Entry
X809_30085 CDS
T02956
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ppol
Paenibacillus polymyxa CR1
Pathway
ppol03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ppol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
X809_30085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppol03400
]
X809_30085
Enzymes [BR:
ppol01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
X809_30085
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
X809_30085
DNA repair and recombination proteins [BR:
ppol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
X809_30085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
AIW40301
LinkDB
All DBs
Position
complement(3266269..3267114)
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AA seq
281 aa
AA seq
DB search
MPELPEMENYRILLSKQILDIPITGVKVSREKSINTEVETFEKQLLGTTVVYLERRGKHL
IFHLNTGGRLVLHLMLGGLLYLGTEEQRPDRTVQIELDFSGLKLYFIGLRLGYLHLLTAK
ETEEALSDLGPDPLDRRMTLEKFTARLKGRRGILKTTLVNQQIFSGIGNCYSDEIAYIAG
FTPGSKVQNIVQSPEKVEKLYHATQSVLREATAEGGYMEMPLMEGDTLTGGFDHRCRVYD
REGEESPSGGKIVRVELAGKKAFYCPERLWKSHHAYSHGSR
NT seq
846 nt
NT seq
+upstream
nt +downstream
nt
atgccggaacttcctgaaatggaaaactacagaatcttattatcaaaacaaattttggac
attccgattactggagtgaaggttagccgtgaaaagtccattaatactgaagtggaaacg
tttgagaagcaattgctgggaacgactgttgtatatttagaacgtcgaggcaagcatttg
atttttcatttaaacacgggcgggcggctcgtacttcatctgatgttgggaggactgtta
tatctgggaacggaggagcagcgtccagatcgtacagttcagatcgaattagattttagt
ggattaaagctttattttatcggactgcgcttaggttatctgcacttactgacggctaaa
gaaacagaggaggctttgtcagacctgggacctgatccgttagaccgccgcatgacattg
gaaaagtttacagcacggctgaagggacgccgggggattttgaaaacaacgctggtgaat
cagcagattttttcgggtattggcaattgttattcggacgaaattgcttatatcgccgga
tttacaccgggttccaaagtacaaaacattgtgcagtccccagaaaaagtggaaaaacta
tatcatgccactcaatccgtactacgtgaagctactgcggaaggcgggtacatggaaatg
cctctaatggagggggacacgctaacaggtggatttgatcatcggtgtcgagtatatgac
cgcgaaggagaagaatctccaagtggcggaaaaattgtaagggttgaactggcggggaaa
aaagcattttattgcccggagcggctttggaaaagccaccacgcgtactcacatgggagc
cgatga
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