KEGG   Paenibacillus polymyxa CR1: X809_30305
Entry
X809_30305        CDS       T02956                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
ppol  Paenibacillus polymyxa CR1
Pathway
ppol02024  Quorum sensing
ppol03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ppol00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    X809_30305
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    X809_30305
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppol03019]
    X809_30305
   03036 Chromosome and associated proteins [BR:ppol03036]
    X809_30305
Messenger RNA biogenesis [BR:ppol03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     X809_30305
Chromosome and associated proteins [BR:ppol03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    X809_30305
SSDB
Motif
Pfam: Hfq LSM Hfq_1 DUF150_C
Other DBs
NCBI-ProteinID: AIW40337
LinkDB
Position
complement(3311054..3311299)
AA seq 81 aa
MNKSINIQDTFLNQLRKDSIPVTVYLINGFQVRGTIKAFDNFTIVIDSDGKQQLIYKHAI
STFTPQRNVSLVQQQDNASDN
NT seq 246 nt   +upstreamnt  +downstreamnt
atgaacaagtccattaatatccaagatacgtttctgaatcaattgcgcaaggattctata
cctgtaacggtatacctcatcaatggatttcaggtgcgagggacgattaaagcatttgac
aattttacgattgttatcgactcggatggaaagcaacagctgatttacaagcatgccatc
tccacctttacaccgcaacgcaatgtatcgcttgtacagcaacaggataacgctagcgat
aactga

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