Paenibacillus polymyxa CR1: X809_30305
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Entry
X809_30305 CDS
T02956
Name
(GenBank) RNA-binding protein Hfq
KO
K03666
host factor-I protein
Organism
ppol
Paenibacillus polymyxa CR1
Pathway
ppol02024
Quorum sensing
ppol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
X809_30305
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
X809_30305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppol03019
]
X809_30305
03036 Chromosome and associated proteins [BR:
ppol03036
]
X809_30305
Messenger RNA biogenesis [BR:
ppol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
X809_30305
Chromosome and associated proteins [BR:
ppol03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
X809_30305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Hfq_1
DUF150_C
Motif
Other DBs
NCBI-ProteinID:
AIW40337
LinkDB
All DBs
Position
complement(3311054..3311299)
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AA seq
81 aa
AA seq
DB search
MNKSINIQDTFLNQLRKDSIPVTVYLINGFQVRGTIKAFDNFTIVIDSDGKQQLIYKHAI
STFTPQRNVSLVQQQDNASDN
NT seq
246 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagtccattaatatccaagatacgtttctgaatcaattgcgcaaggattctata
cctgtaacggtatacctcatcaatggatttcaggtgcgagggacgattaaagcatttgac
aattttacgattgttatcgactcggatggaaagcaacagctgatttacaagcatgccatc
tccacctttacaccgcaacgcaatgtatcgcttgtacagcaacaggataacgctagcgat
aactga
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