Paenibacillus polymyxa CR1: X809_31915
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Entry
X809_31915 CDS
T02956
Name
(GenBank) helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
ppol
Paenibacillus polymyxa CR1
Pathway
ppol03022
Basal transcription factors
ppol03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppol00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
X809_31915
09124 Replication and repair
03420 Nucleotide excision repair
X809_31915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppol03021
]
X809_31915
03400 DNA repair and recombination proteins [BR:
ppol03400
]
X809_31915
Enzymes [BR:
ppol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
X809_31915
Transcription machinery [BR:
ppol03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
X809_31915
DNA repair and recombination proteins [BR:
ppol03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
X809_31915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
AAA_22
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AIW40633
LinkDB
All DBs
Position
complement(3659878..3661701)
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AA seq
607 aa
AA seq
DB search
MNPDHPCIVQRDFTVLLEMGLPGSEWARSQLQIYAELVKSPSAFHTYHITPLSLWNAAAL
GWSAEDIQNSLHSMSRWDIPRDLLKDIEQLVSRYGTLTLSREGTEEERAYSTDTIGGYRT
EHEPDGGIKTGKANSYTMGDRLILAAETPALLGELLTKQELKQLGLLRVDEESASVPPEN
RGLLKQELTRLGYPVVDTAGYLEGNQLSFTLGKGQTKLQLRDYQVKAADAFEGADGLGGS
GVLVLPCGAGKTVIGMAVMNRFQCEVLILTSNTTSVRQWVEELKRKTDIPADSIGEYSGQ
KKEVRPITVATYQILTHRRTKDGDFEHMKLLSERKWGLIIYDEVHLLPAPVFRATADIQA
TRRLGLTATLVREDGCERDVFSLIGPKRYDMPWKELERQGWIAQVDCVELRLPMTAELLE
RSMRAEGRQQYRIAAENPVKLEAVRSLMQQHSGLPTLIIGQYLDQLRILAQELGVPLITG
SMSQTERVRWFDAFRKGTIRTLLVSKVANFAVDLPDAAVAIEVSGSFGSRQEEAQRLGRI
LRPKSGENKAYFYALVTENSKETDFAARRQLFLIEQGYEYAVRRFSVTEAIVGRDDKPGD
RGKKKEA
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgaatccagatcatccttgtattgtacaacgtgattttaccgttctgctggagatgggc
ttgcccggttcagaatgggctcgttcacagttgcagatttatgcggagctggttaaaagc
ccgtccgcttttcatacataccacatcactccattgtctttgtggaacgcagctgccctc
ggatggagtgctgaggacattcaaaatagtttgcactccatgtcccgttgggatattcca
cgtgatttgttgaaggatattgaacagctcgtttctcgttatgggacgttgacgctttca
cgggagggtacggaagaagagcgtgcttatagtacagatactattggcggataccgtact
gagcatgagccagacggaggtataaagacagggaaagccaacagctatacaatgggtgat
cgcttgatcttggcagcagagacccccgctttactgggtgagctactgaccaagcaagag
cttaaacagcttggtttacttcgagttgatgaggaaagcgcatcggttccgcccgaaaat
cgaggcttgctcaagcaggaattaacgcgcttgggatatcccgttgtggatacggcaggc
tatcttgaggggaatcagcttagtttcaccttgggaaagggacaaacgaagttgcagctt
cgtgattatcaagtaaaggccgctgatgcgtttgaaggagcggacggcttagggggtagt
ggtgtactggtgcttccatgcggagccggaaaaacagtgataggtatggcggtaatgaat
cggtttcagtgcgaggtgcttattctaacatctaatactacttctgtacggcaatgggta
gaagagttaaaacgaaagacggatattcctgccgattccattggggaatatagtggtcag
aaaaaagaggtgcgtccgattacggtggcgacctaccaaatcttgacacaccgtcgcacc
aaagatggggattttgagcatatgaaactgctgagtgagcggaagtggggactcattata
tatgatgaggttcatttgctgcccgcgccagtattccgggcgacggctgacattcaggct
acccgtcgtttggggttaacagccacgctggttcgagaggatggttgtgaacgcgatgtg
ttctctttaattggacccaaacggtatgatatgccgtggaaggaactggagcgacagggc
tggatcgctcaggtcgattgtgtggagctacggcttccaatgacagctgaacttttggag
cgcagtatgcgtgccgagggtagacagcagtaccgaattgcagccgaaaatccggtcaaa
ctggaggcggtacgtagcctgatgcagcagcacagcggcttgcccacgcttattattggt
caatatttggaccaattacgtatattggctcaggagctcggtgtcccactgattacgggt
tcaatgagccagacggagcgggtgcgttggtttgatgcgttccgcaagggtacaattcgg
accctattggtatccaaggttgcaaactttgcggtggatctgccggatgcggcagtagcc
atagaggtatcgggtagctttggctctcgtcaggaagaagcgcagcgactgggccgcatt
ttgcgaccaaagtcgggcgagaataaagcttatttttatgcgctagtgacggagaatagc
aaggagacggattttgcagctcgtcgtcagctgtttctgattgagcaaggctatgaatat
gcggttcgcagatttagtgtgacagaggctatcgtaggccgggatgataagcctggagat
cgtggaaagaaaaaggaggcctaa
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