Paenibacillus polymyxa CR1: X809_38955
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Entry
X809_38955 CDS
T02956
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ppol
Paenibacillus polymyxa CR1
Pathway
ppol03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppol00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
X809_38955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppol03021
]
X809_38955
03400 DNA repair and recombination proteins [BR:
ppol03400
]
X809_38955
Enzymes [BR:
ppol01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
X809_38955
Transcription machinery [BR:
ppol03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
X809_38955
DNA repair and recombination proteins [BR:
ppol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
X809_38955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AIW41852
LinkDB
All DBs
Position
complement(5266262..5269876)
Genome browser
AA seq
1204 aa
AA seq
DB search
MLDVNNFEYMKIGLASPEKIRSWSRGEVKKPETINYRTLKPEKEGLFCEKIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDM
SPRSLEEIIYFASYVVTDPGDTPLEKKQLLSEKEYRSYREKYGYGFQAGMGAEAVKKLLQ
DLDIDKELEFLKEELRTAQGQRRNRAIKRLEVIEAFRNSGNQPDWMIMDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPYLKMYQCGLPKE
MALELFKPFVMKELVNKGLAHNIKSAKRKVERVSAEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPILVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLASGNIL
NPKDGKPVVTPSQDMVLGSFYLTMDNKEEEGSNMILRNMNEAISAYQRGTAGLHARVAIP
VKALNKTSFTEKQQEAMLITTVGKIIFNEIFPASFPYINDATRANLLYGTAEEFFVYEKG
VNLTEAIQNAPQANGVGKDYLGNIIARCFETYHTTETAVILDKIKQLGFTYSTRAGVTVA
VSDVIVPVEKQEILKGSEDKAQVVTNQYRRGLITNEERYDRIIDIWSKAKDDITEVLMKS
MDRYNSIMMMVDSKARGNKSQITQLGGMRGLMANPSGRIIELPIKSNFREGLTVLEYFIS
THGARKGLADTALRTADSGYLTRRLVDVAQDVIVREEDCGTDKGFTVSRIQDGKEVIEDL
YDRLEGRYCFETVRHPETGEILARRNELIDSDKAEAIVKAGVHKVQIRSVLSCRAKHGVC
KKCYGRNLATGKHVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL
FEARNPKGQATISEIDGTVKEVREGKDRREIDIQGEAETKTYSVTYGSRLRVSEGMTVEA
GDELTDGSIDPKEMLRIKGIRGVQNYILQEVQRVYRNQGVEINDKHVEVMIRQMLRKIRI
IDAGDTILLPGSFVDVHEYENANKIAILSGQEPAVAKPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKVDQLLGLKENVIIGKLIPAGTGMNRYRSVKFAQPEEGQSPSEELEP
ISAE
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
ttgttggacgttaacaatttcgaatatatgaaaatcgggcttgcttcccccgaaaagatt
cgttcttggtcccgcggagaagtcaaaaaaccggagacgattaactatcgtacgcttaaa
ccggaaaaagaaggactattttgcgagaaaattttcggacctacgaaagactgggaatgt
cattgcggtaagtacaaacgtgtacgctataaaggtgttgtctgtgaccgttgtggagta
gaagttactcgcgctaaggttcgacgtgagcgtatgggccatattgagttggctgctcct
gtatcgcacatttggtactttaaaggcattccaagtcgtatgggtcttgctcttgatatg
tctccaagatctctggaagagatcatttacttcgcatcttatgttgtaaccgatccagga
gatacgcctttggagaaaaagcaactcctgtccgagaaagaataccgtagctatcgtgaa
aaatatggctatggcttccaggcaggtatgggtgctgaagcggttaaaaagcttcttcaa
gatttggatatagacaaagagttggaattcttgaaagaagagctgcgtacagctcaagga
caacgtcgtaaccgtgcaatcaaacgccttgaagttattgaggcattccgtaactccggc
aaccaaccggattggatgatcatggacgtacttcctgttattcctcctgagcttcgtcca
atggtacagttggatggtggtcgtttcgctacttctgaccttaacgacttgtatcgtcgt
gttattaaccgtaataaccgtctgaaacgtctgttagatctaggtgcgccagatattatc
gtacaaaatgaaaaacggatgttgcaggaagctgttgacgccttgattgataatggtcgt
cgtggtcgtcctgttacaggtccaggtaaccgtcctttgaaatccctcagccacatgctg
aaaggtaaacaaggacgtttccgtcagaacttgctcggaaaacgtgttgactactctggt
cgttccgttatcgttgtaggtccgtacttgaaaatgtatcaatgcggtttgccgaaagaa
atggcacttgaactgttcaaaccttttgttatgaaagaactagtgaacaaaggtttggcg
cacaatatcaagagcgcgaagcgtaaagtagaacgtgtgagtgcagaagtatgggatgtg
ctggaagaagtaatcaaggagcatccagttcttctgaaccgtgcccctacgttgcataga
ctcggtatccaggcgttcgaaccgattttggttgagggtcgtgcgattcgtctgcatccg
ctcgtatgtactgcatataatgccgactttgacggtgaccaaatggctgttcacgttccg
ttgtctgcggaagctcaagctgaagctcgtttgcttatgctagcatccggcaacattttg
aatccgaaagacggcaagccagttgttacaccttcccaggatatggttcttggttctttc
tatctgactatggataacaaagaagaagaaggaagcaatatgatccttcgcaacatgaat
gaagctatatcggcttaccaacgcggtacagctggtcttcatgctcgtgtagctattccg
gttaaagctttgaataaaacgagctttacagaaaaacaacaggaagcgatgttgatcaca
acggttggtaaaattatttttaatgaaattttcccggcaagcttcccgtacatcaatgat
gcgacccgtgcgaacctgctttatggtactgcggaggagttctttgtttacgagaagggt
gtaaatcttacagaagccattcaaaacgctccgcaagctaacggagtaggcaaggattac
cttggtaatatcattgcccgttgttttgagacttaccatacaacagaaacagctgtaatt
ctggataaaatcaagcagcttggctttacgtattccactcgtgcaggggtaaccgttgct
gtatcggacgtaatcgtgccggtggaaaaacaagagattcttaagggatctgaggacaaa
gcgcaagttgtgacgaatcagtatcgtcgtggtctgattacgaatgaagaacgctatgac
cggattatcgacatttggtctaaagcgaaagatgatattaccgaagtattgatgaagtcc
atggatcgctacaactctatcatgatgatggtggactccaaagcgcggggtaacaagtca
cagattactcagctcggcggtatgcgtggtctgatggccaatccatccggacgtattatc
gaactcccaatcaaatcaaatttccgtgaaggtctgacagtactcgagtacttcatctcc
actcacggagcgcgtaaaggtttggcggatacagccctccgtacggctgactccggttac
ctgactcgtcgtctcgtagatgtggcacaggatgttatcgtgcgcgaagaagactgcgga
acggataaaggcttcacagtaagtcgtatccaggacggtaaagaagtgattgaggatctc
tatgaccgtctggaaggtcgctattgctttgaaacggtacgtcatcctgagactggcgag
attttggctagacgtaatgaactgattgactccgacaaagctgaagcgattgttaaagcc
ggtgtacacaaagttcagattcgttctgtactaagttgccgtgctaaacatggcgtctgc
aagaaatgctacggtcgcaatctggctactggtaaacacgttgagattggtgaagcagtt
ggtattatcgctgcacaatccattggtgagccaggaacacagcttactatgcgtacgttc
cacacaggcggcgtagcgggtgacgatattacacaaggtttgcctcgtatccaggagctt
tttgaagcacgtaatcctaaaggtcaggcaactattagtgaaattgacggtacagttaaa
gaagttcgtgaaggtaaagaccgtcgtgagatcgacattcagggtgaagctgaaacgaaa
acatattcagtaacgtatggttcccgcctgcgcgtaagcgaaggtatgactgttgaagct
ggggacgaactgacggatggttcgattgatcctaaagaaatgttgcgtattaaaggtatt
cgcggggtgcagaactatatccttcaggaagttcaacgcgtataccggaaccagggcgta
gaaatcaacgacaagcacgtagaagttatgattcgtcaaatgttgcgtaaaatccgtatc
attgatgcgggcgacacgatcttacttccaggctcctttgttgatgtccatgagtatgaa
aatgcaaacaagatagcgattctcagcggccaagaaccagcggtagccaagccggtactg
ctcggtattaccaaggcctctctggaaactgactccttcttgtcagcagcatccttccag
gaaactactcgtgtcttgactgatgcagctattaaaggcaaggtcgatcagttgcttggg
ctgaaagagaacgtaattattggtaaattgattcctgcgggaacaggtatgaaccgttac
cgtagcgtgaaatttgcccaaccagaagaggggcagtctccatctgaggagctcgaacca
atttcggccgagtaa
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integrated database retrieval system
