Paenibacillus polymyxa CR1: X809_40565
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Entry
X809_40565 CDS
T02956
Name
(GenBank) ATP-dependent helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
ppol
Paenibacillus polymyxa CR1
Pathway
ppol03022
Basal transcription factors
ppol03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppol00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
X809_40565
09124 Replication and repair
03420 Nucleotide excision repair
X809_40565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppol03021
]
X809_40565
03036 Chromosome and associated proteins [BR:
ppol03036
]
X809_40565
03400 DNA repair and recombination proteins [BR:
ppol03400
]
X809_40565
Enzymes [BR:
ppol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
X809_40565
Transcription machinery [BR:
ppol03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
X809_40565
Chromosome and associated proteins [BR:
ppol03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
X809_40565
DNA repair and recombination proteins [BR:
ppol03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
X809_40565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
HBB
ResIII
PDDEXK_1
Helicase_C
PhoH
preSET_CXC
Motif
Other DBs
NCBI-ProteinID:
AIW42145
LinkDB
All DBs
Position
complement(5656256..5658628)
Genome browser
AA seq
790 aa
AA seq
DB search
MTGTGDRMKEPIHISVRPLVEYVHRSGSIHSGFRSNSSMLEGTRVHQVIQKGYKEHDRKE
VHLRTEISYKDELFIIEGRCDGLIELDGVWTVDEIKSISLPLEDIQGDGQPVHWAQAFLY
AYMIAREEQQHSMQVQLTYVQAHSEDIRRFRRELSFAELEAFAQEMIAGYAPYAFLLRAH
AEKRDASIAMLNFPFDTYRSGQRTLAGSVYKTIAEGVNLFAKAPTGIGKTVSTLFPAIKA
IGEGQVRRVYYVTARTTTRAAAEEAYARMQAQGLHMHVVTLTAKDKICFKDENDCDAGSC
SMCEGYYDRINGAVSDILANETLMTRAVIEHYARKHKVCPFEFSLDVAYASDGIISDYNY
VFDPRISLKRLLEEHKRKGVVLVDEAHNLVERGRDMFSAEILKSSFLELKREFKLLSPEI
AAAASAVNAHMITLRKQYADTGKAVETVAPQEVLELLVPFVEAAERELVTGGSTSHASGE
GTAYALLLDTYFTAQNMLRIAALYDERYVTYVEAGRSEVRVKLFCLDPSHLLGQAIKGYR
SAIYFSATLTPLAYYRDMLGANEEDYTLQVPSPFHQEQWDVRLLPLSIRYRDRERSKGAI
ADMLAALVVERKGNILVFFPSYPYLREVYEEFMLRDVSANTLVQSPGMTEPERDRFLEAF
QPGQEHTLLGFAVLGGVFAEGVDLPGDRLNGVVIVGVGLPQIGAERDVLRDYFSEQGRNG
FNYAYVYPGMNKVLQAGGRLIRTEHDEGLLVLVDDRFAKEPYASLLPDEWKSYRLTEQAG
LRKEWIDYEL
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgaccggaacgggtgatcgtatgaaggaaccaattcacatatcggtgcgtcctcttgtg
gagtatgtgcatcggagcggcagcattcatagcggctttcgctcgaatagcagtatgctc
gaaggaactcgcgtgcatcaggttatccagaaaggttacaaggagcatgaccgcaaagag
gtacatttacgtacagaaatttcgtataaggacgaattgtttatcattgaaggtcgctgt
gacggactgattgagctggatggcgtatggacggttgatgaaattaaatcgatctctttg
cccctcgaagatattcagggtgacggtcaacccgtacactgggcacaagcatttctgtat
gcctatatgattgctcgtgaggaacaacagcattccatgcaggtccagcttacttatgta
caggcacacagtgaagacattcgccgatttaggcgcgagctatcctttgctgagctagaa
gctttcgcacaagagatgattgctggttatgcaccgtatgcattcctgctgagagcacat
gcggaaaagcgggatgccagcattgctatgttgaactttccctttgatacgtatcgttcg
ggtcagcgaactctcgcgggttcggtgtacaagacgattgccgaaggggttaacctgttt
gccaaagcacctacaggtattggtaaaacggtatccaccttgtttcctgcgatcaaggct
atcggtgagggccaggttaggcgagtatattatgtgacggctcgtaccacgactcgggca
gcagccgaagaagcttacgctagaatgcaggcccaagggctgcacatgcatgtggtgact
ttgactgcgaaggataaaatttgctttaaggatgaaaatgattgtgatgctggatcatgc
agcatgtgcgagggctattacgaccggatcaacggtgcggtatccgatattttggcgaat
gagacgttaatgacccgggcggtgattgagcattatgcgcgcaagcataaggtatgtccc
tttgaattttcgctggatgtggcgtatgcctcggatggtataatcagtgattataattat
gttttcgatccacggatttctttgaaaagattgctggaggagcacaagcgaaaaggtgtc
gtactggtggatgaggcgcataatctggtagaacgcggtcgggacatgttttcggcggaa
attttgaaatcttcttttttagaactgaaacgagaatttaagttgctaagcccagagatt
gctgcggctgcgagtgcagtgaacgcacatatgattacgctgcgcaagcaatatgcagat
acaggaaaagcagtggagacagtagcaccgcaagaggtgctggagctgttggtgcctttt
gtggaagcagctgaacgtgaactggtgacggggggcagtacaagccacgcaagcggggag
ggtacggcttatgcattgcttctagatacgtattttaccgctcagaatatgctgcgcatt
gctgctttatacgatgaacgatacgttacttatgtggaagcggggcgcagtgaagtgagg
gtcaagctgttctgcctcgatccttctcacttgctgggacaagctattaagggctaccgc
tcagccatttatttttccgcaacgttgacaccgcttgcttattaccgggacatgctcgga
gcaaacgaggaagattatacgttacaggttccttcccccttccatcaggagcagtgggat
gtacgtctgctgccgctctccatccgttatcgggatcgtgagcgttccaaaggggcgatt
gcggatatgctggctgcattggttgtagaacggaaaggaaatatccttgtatttttcccg
tcctatccatatctgcgtgaggtgtatgaggagttcatgcttcgggacgtgtccgcaaat
acgttggtacaaagtccggggatgaccgaaccagagcgggatcgatttctagaggctttc
cagcctgggcaagagcacaccttgcttggctttgccgtactgggtggtgtgtttgctgaa
ggtgtcgatttacctggggatcgcttaaatggggtagtgattgtcggcgtcggcttgccg
caaattggagcagagcgggatgtgctgcgggattatttttccgaacagggacggaatggt
ttcaactatgcgtatgtatatccagggatgaacaaggttcttcaggcaggtggcagactt
attcgcacagagcacgacgaaggattgttggtcctggtagatgatcgttttgccaaggaa
ccgtatgcttctttgctgccagacgaatggaaaagctaccgtctgacggaacaagcggga
ttaaggaaggaatggatagactatgaactttaa
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