Psychroserpens ponticola: MUN68_000460
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Entry
MUN68_000460 CDS
T09473
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
ppon
Psychroserpens ponticola
Pathway
ppon02020
Two-component system
ppon02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ppon00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
MUN68_000460 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
MUN68_000460 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppon03021
]
MUN68_000460 (rpoN)
Transcription machinery [BR:
ppon03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
MUN68_000460 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
SF3b1
HTH_12
Motif
Other DBs
NCBI-ProteinID:
WCO01978
LinkDB
All DBs
Position
complement(100078..101544)
Genome browser
AA seq
488 aa
AA seq
DB search
MLKQYLQFKLSQKLSPQQIQLMKLIQLPTQAFEQRLKQELEENPALESGKETKDEFEDNM
DEFDNSDDEFNDNETIEAEDINIDDYLSDDEIPDYRTQANNYSVDDEEKNVPYAAGTSFT
QHLNNQLNTFRLNDNERDIAVFLVGSVDESGYIRRSLSDIVDDLAFTQGVYTDEESVEQI
FQVVHQLDPAGVGARNLQECLSIQLHRKEKYPDVELACNIIDKAFDQFTKKHYKKLLQKF
DITEVQLKDAIEEIERLNPKPGGSYAGNNKMAEHVVPDFAIKIVDGELDLTLNGRNAPEL
HVSREYSNMMKGYKEAKDKSKSQKDAVLFIKQKLDGAKWFIEAIKQRQQTLFVTMSSIMN
YQKEYFLSGDERNLKPMILKDIADEIDMDVSTVSRVANSKYVDTPYGTKLIKEFFSESMT
NDQGEEVSTREIKKILETVIEEENKRKPLTDEKLATILKEKGYPIARRTVAKYREQLDIP
VARLRKKI
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgcttaaacaatatctacagtttaaattatctcagaagttgtcgccacagcaaattcag
ctcatgaagttgattcagttgcctacacaagcttttgagcaacgtttaaagcaagaatta
gaagagaatccagctttggaaagcggaaaggaaactaaagacgagtttgaagacaatatg
gatgagtttgataattctgatgatgaatttaatgacaatgaaaccattgaagctgaagat
attaatatagatgattacttaagtgatgatgaaataccagattatcgcactcaagccaat
aattacagtgttgatgatgaagaaaaaaatgtgccatatgctgctggcacttcttttact
caacatttaaacaatcaattaaatacattcaggctaaatgataatgaacgtgatattgct
gtattcttagtcggaagtgttgatgaaagtggctatatacgtcgctcattaagtgatatt
gttgatgatttagcttttacacaaggtgtatatacagatgaagaatcagtagagcaaata
ttccaagttgtacatcagttagatcctgctggtgttggagctcgtaacttacaagaatgt
ttaagcattcaattacatagaaaagaaaagtatccagatgttgaattggcttgtaatatt
attgacaaggccttcgatcagtttacaaaaaaacattataaaaaactacttcaaaagttc
gacattaccgaggtgcaactcaaagatgccatcgaagaaattgaacgccttaatccaaaa
ccaggtggttcatatgcagggaacaataaaatggcagagcatgttgttccagattttgcc
ataaagattgtagatggtgaattagaccttactcttaatggtagaaatgctccagaactt
catgtgtctagagagtatagtaatatgatgaaaggttataaggaagcaaaagacaagagc
aaatcacaaaaagatgcagtgcttttcatcaaacaaaaattagatggagcaaaatggttt
attgaagctattaaacagcgtcaacaaacattatttgttacgatgagttctattatgaat
taccaaaaagaatattttctttctggtgatgaacgcaaccttaaaccaatgattctaaaa
gatattgctgatgaaattgacatggacgtttcaacagtttctcgtgttgcaaacagtaaa
tatgttgacacgccatatggtacaaaattgattaaggaatttttctcagaatcaatgaca
aatgatcaaggtgaagaagtatctacacgtgaaattaagaagattttagaaaccgttatt
gaagaggaaaataagcgtaaacctctcactgatgaaaaattagcgaccatacttaaagag
aaaggttatccaatagcacgtcgtacagttgcaaagtatcgtgaacagttagatattcct
gtggcaagattgagaaaaaaaatatga
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integrated database retrieval system
