Psychroserpens ponticola: MUN68_011835
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Entry
MUN68_011835 CDS
T09473
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ppon
Psychroserpens ponticola
Pathway
ppon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MUN68_011835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppon03019
]
MUN68_011835
Enzymes [BR:
ppon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MUN68_011835
Messenger RNA biogenesis [BR:
ppon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MUN68_011835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
MTS_N
AAA_22
Helicase_RecD
CMS1
HEM4
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WCO00757
LinkDB
All DBs
Position
2657040..2658278
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AA seq
412 aa
AA seq
DB search
MSFKELNLNKAIVKAIDEAGYTEPTLIQERTIPLVIDKKDVIASAQTGTGKTAAFALPIL
QLLFNKQDAPKKGKKIRALVVSPTRELAAQIGKNFQIYSKYTNLRTTVVFGGAGIEPQID
ILKKGVDIVVATPGRLLDLHKQDVLNLDYIEVLVLDEADLMLDMGFIDDVKKIERLCPEK
KQNLLFSATMPFKVEQLANSILNAPVRIEVTPTSSAAKNVSQILYYVPKRNKMELCLHLL
RNTIKGKRILIFRRTKFGVDKLESTLTKNGYSAERLHGDRTQSERQTALNKFKHAEVNIL
IATDVAARGIDINELDAVVNFDLPNVPETYVHRIGRTGRAGNFGKSYSFCSADEKSYVKS
IQQLINVQIPVEDNHPYPLDPKAKPIVHKKQGSKYKKGRKGEGSKKKKKRWY
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttaaagagctcaatcttaataaagctattgtaaaagctattgatgaagcaggc
tatacagaacctactttaattcaagagcgaaccattcctttagttattgataaaaaagat
gtcattgcttcagcacaaactggaacaggcaaaactgcagcatttgcgttgcctattttg
caattgctttttaacaaacaagatgctccaaaaaaaggaaaaaaaataagagctttagtt
gtaagtccaacgcgtgaactcgctgcacaaattggaaaaaacttccaaatctactctaaa
tacaccaatttaagaacgactgttgtgtttggaggtgctggaattgaaccacaaatcgat
attctaaaaaaaggtgttgatatcgttgttgctacaccaggacgcttattggatttacac
aaacaagacgttttaaacctagactacatagaggttttagtacttgatgaagccgattta
atgctagatatgggtttcatagatgacgttaaaaaaatagaacgtttatgtcctgaaaag
aaacagaatttgttgttttctgcaaccatgccttttaaagtggaacaattagcaaactca
attttaaatgcaccagtacgcattgaagttacgcctacatcttcagcagcaaaaaatgtg
agtcagattttatattatgttcctaagcgaaataaaatggaactgtgtttgcatttatta
cgaaatacaatcaaaggaaaacgcattcttatttttagacgcacaaaatttggtgttgac
aaactagaaagcacactaactaaaaacggttacagtgcagaacgtcttcatggtgaccga
acccaaagtgaacgacaaacagctcttaataaatttaagcatgcagaagttaatattttg
attgctacagatgttgcagcacgtggtattgatatcaatgaattagatgctgttgtgaat
tttgatttacctaatgtgcctgaaacttatgtacatcgtataggaagaacaggtcgagct
ggtaattttggaaaatcatattcgttttgttctgcagatgaaaaaagttacgtgaagagt
attcagcaattgattaatgtacaaattccagttgaagacaatcatccatatcctttagat
ccaaaagccaagccaattgttcataaaaaacaaggtagtaaatataaaaaaggacgaaaa
ggtgaaggttcaaaaaagaaaaagaaacgttggtattag
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