Psychroserpens ponticola: MUN68_012705
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Entry
MUN68_012705 CDS
T09473
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ppon
Psychroserpens ponticola
Pathway
ppon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MUN68_012705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppon03019
]
MUN68_012705
Enzymes [BR:
ppon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MUN68_012705
Messenger RNA biogenesis [BR:
ppon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MUN68_012705
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
P-loop_SecA
AAA_19
Shikimate_DH
UvrD-helicase
CMS1
Motif
Other DBs
NCBI-ProteinID:
WCO00924
UniProt:
A0ABY7RUZ1
LinkDB
All DBs
Position
complement(2851698..2852975)
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AA seq
425 aa
AA seq
DB search
MSFQSLGLSDALLKAISKKGYTTPSPIQEKAIPPVLEGRDVLASAQTGTGKTAGFTLPLL
HYLSENPKAKFRPIRALILTPTRELAAQVHQSVKDYSEFLNISSMVIFGGVNQKPQVARL
RQGVDVLIATPGRLLDLHNQNLLSIKRVEVFVLDEADRMLDMGFLRDIERVMKLMPEKRQ
NLMFSATFSKDIRKLANGILNNPIQVEATPENTTVEAISQKVYRVAKGKKTGLIIKLISD
GNWKQVLVFTRTKHGANKLCKKMISSGITAAAIHGNKSQGARTKALAGFKNGSVKVLVAT
DIAARGLDIPLLPHVVNFELPNISEDYVHRIGRTGRAGANGQALSLVSADETTYLRDIEK
LIGQKIDVEIVEGFEPDPNASTVPIKPGQNRQQRNSRNSGSKNSSGNRNNRNKSNNSRRR
NDRRN
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttcaatctttaggcttatctgatgccttgttaaaagcaattagcaaaaaagga
tatactactccaagtccaattcaagaaaaagcaattcctcctgtgttagaaggacgtgat
gttttagcatctgcgcaaacaggtacaggtaaaacggcaggttttacactgccacttctg
cattatttatctgaaaacccaaaagcaaaattcagaccaattcgtgctttaattttaaca
ccaacacgagagcttgctgcacaagttcaccaaagtgttaaagactatagtgagttttta
aatatcagtagtatggtaatttttggaggcgtgaatcaaaagcctcaagttgctagatta
cgtcaaggtgtagatgttttaattgcaactcctggccgtttattagatttgcataatcaa
aatttactatctattaaacgtgtggaagtctttgtgcttgatgaagcagatcgaatgcta
gatatggggtttttaagagatatagaacgtgtcatgaaattaatgcctgagaaacgtcag
aatttgatgttttcggctacattttctaaagatatacgaaagcttgctaatggtatctta
aataatccaattcaagtagaagcgactccagaaaatactacagtagaagcgatttctcaa
aaagtttatcgtgtcgctaaaggaaagaaaacgggtttaattattaaacttatttctgat
ggaaattggaaacaagttttagtgtttacaagaacaaaacatggtgccaataagctgtgt
aaaaaaatgataagctctggtattactgctgcagcaattcatggaaataaaagtcaaggt
gcaagaactaaagcgttagctggatttaaaaatggtagtgtaaaagtgctagttgctaca
gatattgccgctcgtggtttagatattcctcttttacctcatgttgtgaattttgaattg
cctaatatttctgaagattatgttcatcgtattggaagaacaggaagagcaggagccaat
ggtcaagcactttctttagtaagtgcagatgaaacgacatatttacgtgatattgaaaag
ttaatcggacagaaaatcgatgtagaaattgtagaaggttttgaacctgatcctaatgca
tcaacagtgccaattaaacctggacaaaatagacaacaacgtaattctcgaaattctggg
tctaaaaattctagcggaaatagaaataatagaaacaagagtaataactctagacgacgt
aacgatagacgaaactaa
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